New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	15387 =	NA (NA)	5 (0.090)	5/268	NT	13.9%	noncoding (1/1345 nt)	IS186	repeat region
	?	CP009273	= 454251	31 (0.560)					intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

CGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTC  >  CP009273/15240‑15535                                                                                                                                                    |                                                                                                                                                      cgcgCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTcc                                                                                                                                                     <  1:701380/150‑1 (MQ=255)  gcgcTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTccc                                                                                                                                                    <  2:429030/150‑1 (MQ=255)        aaaGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAgc                                                                                                                                              <  1:283919/150‑1 (MQ=255)        aaaGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAg                                                                                                                                               <  2:422858/149‑1 (MQ=255)           gagCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAacgc                                                                                                                                            >  1:722272/1‑149 (MQ=255)                      aTGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGt                                                                                                                                <  2:872269/150‑1 (MQ=255)                       tGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGtt                                                                                                                               <  1:383690/150‑1 (MQ=255)                            tgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGt                                                                                                                          <  1:238612/150‑1 (MQ=255)                              aagaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACTCCCCCAAACGCTCAATTAAAGGGTGTGGGAt                                                                                                                        >  2:74452/1‑150 (MQ=255)                                  agTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg                                                                                                                    <  2:278731/150‑1 (MQ=255)                                     tttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCTAACTTTAAGGGTGTGGGAtttagccc                                                                                                                 >  1:976067/1‑144 (MQ=255)                                     tttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCTAACTTAAAGGGTGTGGGATTTCGCCt                                                                                                                 >  1:24924/1‑150 (MQ=255)                                      ttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAACGCTTACTTAAGGGGTGTGGTATTACGccc                                                                                                                 >  2:265143/1‑148 (MQ=255)                                                  gACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACCCCCCAAAAGGCTAACTTAAAGGGTGTGGTATTACGCCTGATATGATTTa                                                                                                      >  1:706393/1‑148 (MQ=255)                                                     ccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg                                                                                                 <  1:59646/150‑1 (MQ=255)                                                      cGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCCCCTAAACGCCAACTTAAGGGGTGTGGGATTACGCCCGATATGAttttaactgc                                                                                                >  1:813956/1‑143 (MQ=255)                                                       gCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGTACCCCCCTAAAACCCAACCTTAGGGGTGTGGGATTATGCCCGTTATTATTTTAAGTGcc                                                                                               >  1:765055/1‑150 (MQ=255)                                                         tAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCTAACTTTAAGGGTGTGGGATTTAGCCTGATATGATTTTAAGTGCCGa                                                                                             >  1:888027/1‑150 (MQ=255)                                                          aaCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACCCCCCCAAGCGCTAACTTAAAGGGTGGGGTATTTGGCCTGATATGTTTTAACGGGCCggc                                                                                            >  2:189933/1‑148 (MQ=255)                                                           aCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCCAAACGCTAACTTAAGGGGTGTGGGATTACGCCTGGTATGATTTAAAGTGGCg                                                                                              >  1:959411/1‑147 (MQ=255)                                                            ccTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCTAACTTAAAGGGTGTGGGATTACGCCCGATATGATTTAAAGTGCCGGTg                                                                                           >  1:941691/1‑149 (MQ=255)                                                                    aaaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCACGCCCCTAAACTCTTACTTTATGGCTGTGGTGTTAAACCTGATTTGATTTAACGGGGCGCAGAactacttt                                                                                  >  2:651551/1‑148 (MQ=255)                                                                     aaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAACCGCCCACTTAATGGTTGTGGTCTTTCGCCTGTTATTTTTTTACTTTCCCATGTATTAAtctc                                                                                 >  2:911314/1‑150 (MQ=255)                                                                            cccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGAt                                                                            <  2:81658/148‑1 (MQ=255)                                                                             ccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCTCAACGCCTAATTAAGGGGTGTGGGATTTTGCCTGTTATGGTTTTAAGTTCCGATGAATTACTCTCatcacaaa                                                                         >  1:45591/1‑143 (MQ=255)                                                                             ccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                         <  2:707795/150‑1 (MQ=255)                                                                               gTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTg                                                                       <  2:287040/150‑1 (MQ=255)                                                                                tGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAGCGCTAACTTTAAGGGTGGGGGATTACTCCCGATATGATTTTAAGTGCCGATGAATTAATCTCACGATAAATgg                                                                      >  1:478069/1‑150 (MQ=255)                                                                                            ggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCt                                                           <  2:140698/149‑1 (MQ=255)                                                                                            ggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCt                                                           <  1:271512/149‑1 (MQ=255)                                                                                             gTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                         <  2:638478/150‑1 (MQ=255)                                                                                             gTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                         <  1:74452/150‑1 (MQ=255)                                                                                                  aaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCat                                                    <  2:316719/150‑1 (MQ=255)                                                                                                    tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCATAAGCGCCAACTTAAGGGGTGTGGGATTACGCCTGGTATGATTTTAAGTGCCGATGAATTAATCTCACGATAAATGGTCAGCAATTCTGGCCCcta‑t                                                 >  1:946054/1‑150 (MQ=255)                                                                                                         tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTa                                            <  2:183728/150‑1 (MQ=255)                                                                                                             ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGcc                                        <  1:189933/150‑1 (MQ=255)                                                                                                               gAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCACTCCCCTAAGCGCTAACTTAAGGGGTGGGGGGTTATGCCCGATATGATTTTAAGTGCCGATGAATTACTCTCACGATAACAGGTCAGCAATTTTTGCCCCTATTTGGAAAGcc                                        >  1:553016/1‑149 (MQ=17)                                                                                                                                  tAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCgg                    <  2:722272/149‑1 (MQ=40)                                                                                                                                      gTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt               <  2:681933/150‑1 (MQ=38)                                                                                                                                         gCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAt            <  2:888027/150‑1 (MQ=35)                                                                                                                                          cGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATg           <  2:267574/150‑1 (MQ=34)                                                                                                                                            gggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGcc         <  2:765055/150‑1 (MQ=34)                                                                                                                                               aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCggg      >  1:610663/1‑150 (MQ=33)                                                                                                                                                   cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGctc  <  2:706393/150‑1 (MQ=11)                                                                                                                                                    |                                                                                                                                                      CGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA‑TTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTC  >  CP009273/15240‑15535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.