New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 1485085 | 75 (1.300) | 35 (0.990) +GTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC |
28/170 | NT | 60.4% | intergenic (‑115/‑74) | gapC/cybB | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment)/cytochrome b561 |
? | CP009273 | = 1857027 | 0 (0.000) | intergenic (‑341/‑1) | msrB/gapA | methionine sulfoxide reductase B/glyceraldehyde‑3‑phosphate dehydrogenase A |
CAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATATGACTATCAAAGTAGGTATCAACGGTTTTGGCCGTATCGGTCGCATTGTTTTCCGTGCTGCTCAGAAACGTTCTGACATCGAGATCGTTGCAATCAACGACCTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCC > CP009273/1856878‑1857174 | cAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAatat > 2:346573/1‑150 (MQ=255) cAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAatat < 2:433038/150‑1 (MQ=255) cAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAatat < 2:538094/150‑1 (MQ=255) cAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAatat > 2:597426/1‑150 (MQ=255) gagTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacc < 1:941792‑M2/150‑9 (MQ=255) gagTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacc > 1:274619‑M2/1‑142 (MQ=255) gAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaaca < 2:246404‑M2/150‑18 (MQ=255) gtcagtcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacac < 2:73905‑M2/149‑19 (MQ=255) gtcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatca > 1:118231‑M2/1‑127 (MQ=255) cgTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcataca > 1:195236‑M2/1‑123 (MQ=255) cgTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcataca > 2:790918‑M2/1‑123 (MQ=255) tAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacact > 2:963828‑M2/1‑121 (MQ=255) aTGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacacta < 2:909801‑M2/149‑31 (MQ=255) gCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaa > 1:59218‑M2/1‑111 (MQ=255) acaGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagt < 1:370511‑M2/150‑42 (MQ=255) acaGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagt < 2:558990‑M2/150‑42 (MQ=255) ttgattTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcag < 1:748305‑M2/150‑48 (MQ=255) tttGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCATCCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatc > 1:811774‑M2/1‑99 (MQ=255) ttGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatca < 1:763858‑M2/150‑53 (MQ=255) tCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc > 2:601353‑M2/1‑95 (MQ=255) tCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc > 1:796794‑M2/1‑95 (MQ=255) gCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccg < 2:499841‑M2/150‑58 (MQ=255) aaTGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgtt > 1:525559‑M2/1‑91 (MQ=255) aaTGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgtt < 2:713185‑M2/150‑60 (MQ=255) acacGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtac > 1:909801‑M2/1‑83 (MQ=255) cacGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGTTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacg > 2:269071‑M2/1‑82 (MQ=255) acGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgt < 2:379146‑M2/150‑70 (MQ=255) cGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtt > 1:73905‑M2/1‑74 (MQ=255) cTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttca < 2:331636‑M2/150‑79 (MQ=255) aCGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgt > 1:978421‑M2/1‑68 (MQ=255) aCGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgt < 2:142500‑M2/150‑83 (MQ=255) cGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtg > 1:346573‑M2/1‑67 (MQ=255) gCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaa < 1:860448‑M2/150‑88 (MQ=255) cGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaat > 2:370511‑M2/1‑62 (MQ=255) gTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatg < 1:383383‑M2/150‑90 (MQ=255) tttGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgc < 1:497862‑M2/150‑98 (MQ=255) aTTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacaccaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcc > 2:550871‑M2/1‑47 (MQ=255) ttACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccg > 2:941792‑M2/1‑44 (MQ=255) ttACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccg > 2:444451‑M2/1‑44 (MQ=255) ttATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaag < 2:343170‑M2/150‑121 (MQ=255) tATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagc < 1:11311‑M2/150‑122 (MQ=255) ttCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcc > 1:558990‑M2/1‑27 (MQ=255) cACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctg > 1:379146‑M2/1‑25 (MQ=255) aCAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctgga < 2:970237‑M2/146‑127 (MQ=255) cAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaagga < 1:447386‑M2/150‑132 (MQ=255) cAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaagga < 1:90851‑M2/150‑132 (MQ=255) cAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaa > 1:970237‑M2/1‑19 (MQ=255) aaTAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggat < 1:918364‑M2/149‑133 (MQ=255) tAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcgccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaa > 1:30700‑M2/1‑15 (MQ=255) aGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaat < 2:913535‑M2/150‑137 (MQ=255) tggtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaatttt < 2:6628‑M2/150‑140 (MQ=255) tggtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaatttt < 2:777864‑M2/150‑140 (MQ=255) ggtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaatttt < 1:122550‑M2/149‑140 (MQ=255) gtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttca < 2:354123‑M2/150‑142 (MQ=255) gtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttca < 1:945616‑M2/150‑142 (MQ=255) gtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttca < 1:721135‑M2/150‑142 (MQ=255) gAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatcc > 2:660518‑M2/1‑6 (MQ=255) aaTATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatcc < 1:323815‑M2/149‑145 (MQ=255) tatggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatccgaa < 2:824355‑M2/150‑148 (MQ=255) | CAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATATGACTATCAAAGTAGGTATCAACGGTTTTGGCCGTATCGGTCGCATTGTTTTCCGTGCTGCTCAGAAACGTTCTGACATCGAGATCGTTGCAATCAACGACCTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCC > CP009273/1856878‑1857174 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |