| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,181 | G→C | 13.0% | intergenic (‑115/+480) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,181 | 0 | G | C | 13.0% | 350.4 / 8.4 | 120 | intergenic (‑115/+480) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (49/53); new base C (15/2); total (64/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.90e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 126 total aligned reads displayed.
TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAT > CP009273/360033‑360330 | caaacatcagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg > 2:687465‑M1/72‑150 (MQ=255) aaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc > 2:87613‑M1/71‑150 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 2:141533/149‑1 (MQ=255) aacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc‑g > 2:650936‑M1/70‑150 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGa < 1:802050/150‑1 (MQ=255) aacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGAt > 1:324786‑M1/67‑150 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGAtt > 2:870323‑M1/66‑150 (MQ=255) cagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGAttt > 2:765315‑M1/65‑150 (MQ=255) caaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGAtt > 1:893514‑M1/142‑150 (MQ=255) aGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTg < 1:400947/150‑1 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTa < 1:428166/150‑1 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTCCCAGCCACCCCCCCGGGCGGTTCTTCGCAAAGTTCAAAACCGCTCCCGGC‑GGGGTTGTTCtt > 1:670058/1‑149 (MQ=25) ccaTCCAGTGCGGGACCTCCGATGATACGCTGTCAGACATGAGAATTCCAATCCCCAATTCCTGGCGGTTTATGACGGG‑CGGCCTGCCCGCCACCCTCCGGACCGTTGCTTCGCAACGTTCAGATCCGCTCCCAGC‑GGATTTGTCCTACt < 2:809301/150‑1 (MQ=18) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCCGCCCCCCCCCCCCCCGGCCCGTGCCTTGCAAAGTTCAAATCCGCTCCCGGC‑GGGTGTGTCCTACTctg > 2:864272/1‑147 (MQ=21) aggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGga > 1:588050‑M1/52‑150 (MQ=255) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGGCCTGCCCGCCCCCCCCCCGGGCGGTGCTTCGCAAAGTTGAAAATCGCTCCCCGC‑GGATTTGTTCTAATCAGGggag < 2:956617‑M1/102‑1 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGc < 1:909252/149‑1 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCg < 2:7081/150‑1 (MQ=255) taattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGc > 2:468445‑M1/123‑149 (MQ=255) taattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCg < 2:671582‑M1/28‑1 (MQ=255) aattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGATAGCg > 2:131404‑M1/122‑149 (MQ=255) tctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTc > 2:556551‑M1/44‑150 (MQ=255) attcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGt > 1:279664‑M1/121‑149 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCCGCCCGCCACCCCCCCGGCCGCCGCTTCGCAAAGTTCAAATCCCCCCCCCGCGGGGTTTTTCCT‑CTCCGGAGAGCGtttcc > 1:870323/1‑147 (MQ=18) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCAcc < 1:426135/150‑1 (MQ=255) gctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCAcc > 1:1566‑M1/117‑150 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGGCCTGCCCCCCCCCCTCCCGGCCGTTGCTTCGCAACATTCAAATCCCCTCCCCGC‑GGGTTTTTCCTACTCAGGAGAgagttccccca < 1:925558‑M1/112‑6 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCCGCCCCCCACCCCCCGGGCCGGTGCTTCGCAACGTTTCAATCCCCCCCCCGC‑GGGTTTTTTCTACTCAGGAGAGCGTTTAccca > 1:628686/1‑147 (MQ=18) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCCGCCCGGCCCCCCCCCCCCCGCG‑CGTTTCTTCTCCACCTTTACATCCCCCCCCCGC‑CGGCTTGTTCTTCTCCGGGGAGGGGTCaaccgc > 2:324786/1‑144 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCCGCCCCCCACCCCCCCGGCCGGTGCTTTGCCAAGTTCAAAAACGCCCCCGGC‑GGGGTTTTCCTACTCCGGAGAGAGGTCACCCacaa > 2:471044/1‑149 (MQ=18) aactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa < 2:714510‑M1/40‑1 (MQ=255) aGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAaacaac < 2:785151/149‑1 (MQ=255) tggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGa > 1:243157‑M1/104‑150 (MQ=255) gcgtagaagcgaagaaataattccctttataccatgtcccgtattaccgcctttgagtgagctgatgccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTGCTCAGGAGAGCGTTCACCGACAAACAACAGAt > 2:582140‑M1/102‑149 (MQ=255) ttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa > 1:471044‑M1/24‑150 (MQ=255) tttatttgatgcctggggaattAATTCCTGGCAGTTTATGGTGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa < 2:405342‑M1/128‑1 (MQ=255) ttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa > 1:689656‑M1/22‑149 (MQ=255) ttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa > 1:67004‑M1/22‑149 (MQ=255) tagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa < 1:268764‑M1/52‑1 (MQ=255) aCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg < 2:187015/150‑1 (MQ=255) gaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc > 1:129821‑M1/97‑149 (MQ=255) atttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg > 1:187899‑M1/20‑149 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa < 1:177472/150‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa < 1:835220/150‑1 (MQ=255) gcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa > 2:571701‑M1/94‑150 (MQ=255) gatgcctggggaattAATTCTTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg > 2:452127‑M1/16‑149 (MQ=255) gaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg < 1:961824‑M1/59‑1 (MQ=255) atgcctggggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg > 1:938119‑M1/15‑149 (MQ=255) ccGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAg < 1:735813/149‑1 (MQ=40) ataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt > 2:73176‑M1/86‑150 (MQ=255) ataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt < 1:748658‑M1/65‑1 (MQ=255) gggaattAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt > 1:136869‑M1/8‑150 (MQ=255) ggaattaaTTCCTGGCAGTTTATGGCGGG‑CGTCCTTCCCGCCCCCCCCCCTGCCCGTGTTTTTCAACCATTAAATCCGCCCCCCGC‑GGGGTTGTTCTCCTTATGAGAGCGTTTCCCCCCAAACAACAGAAAAAAAAAAAAGACCAATCtt > 2:593756/7‑150 (MQ=2) aataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:361489‑M1/67‑1 (MQ=255) ccccAATTCCTGGCAGTTTATGGCGGG‑CGTCCCGCCCGCCCCCCCCCGGGCCGGTGCTTCGCAAAGTTCAAATCCGCTCCCCGC‑GGGTTTGTTCTACTCAGGAGAGGGGTTACCCACAAAAAAAAAAAAAAAAGAAAAGGCCAGTCCTTc > 1:138599/1‑150 (MQ=2) cccAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 2:428065/149‑1 (MQ=35) ccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:724585‑M1/70‑1 (MQ=255) ccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:454591‑M1/70‑1 (MQ=255) ctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 2:68045‑M1/78‑150 (MQ=255) aaTTCCTGGCAGTTTATGGCGGG‑TGCCCCGCCCCCCACCCCCCCGGGCGGTGTTTCTCAAAGTTTAAAACCGCTCCCCGC‑GGATTTATCCTTCTCTCGAGGGAGTGGACAGACAAAAAACAGATAAAAAGATAGGCTCAGTCatttgcgt > 2:69124/1‑145 (MQ=2) aaTTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 2:292576/150‑1 (MQ=32) tttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:958683‑M1/72‑1 (MQ=255) tttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 2:287960‑M1/74‑1 (MQ=255) ttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 2:958683‑M1/76‑148 (MQ=255) ttCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCCCCACCCCCCCGGCCCTTGCTTCGCAACAATTAAATCCCCTCCCCGC‑GGGGTTTTTCTACTCCAGGGAGGGGTTCCCCACAAAAAAAAAAAAAAAAAAAAAGGCCCGTCTTTCGACTgc > 2:665759/1‑149 (MQ=2) ttCCTGGCAGTTTATGGCGGG‑CGGCCTTCCCCCCCCCCTCCCGGGCGTTGCTTCGCAACGTTCAAATCCCCTCCCCGC‑GGGGTTTTCCTTCTCAGGAGAGCGGTTACCCACAAACAAAAGATAAAAAGAAAAGCCCAGTCtttttact > 1:650936/1‑143 (MQ=2) tataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt > 2:517214‑M1/75‑148 (MQ=255) tataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt > 2:429230‑M1/75‑148 (MQ=255) tCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCCCCACCCCCCCGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCCGC‑GGGTTTTTCCTACTCAGGAGAGCGGTCACCCACAAAAAACAGATAAAAAAAAAAGCCCCGTCTTTCTACTGAg > 1:448743/1‑150 (MQ=11) taccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:706328‑M1/73‑149 (MQ=255) gtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 2:177985‑M1/89‑1 (MQ=255) gtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:26062‑M1/89‑1 (MQ=255) gtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 2:318476‑M1/89‑1 (MQ=255) tattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:914750‑M1/90‑1 (MQ=255) attaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt < 2:395965‑M1/91‑1 (MQ=255) ttaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:807083‑M1/59‑150 (MQ=255) taccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 2:671326‑M1/92‑1 (MQ=255) ctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt < 2:587876‑M1/99‑1 (MQ=255) ctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt > 2:663889‑M1/52‑150 (MQ=255) cccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg > 2:28080/1‑149 (MQ=31) gtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTgatgcctctagat > 2:42083‑M1/46‑144 (MQ=255) cgacACCCTGCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAGCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 2:223351/147‑1 (MQ=16) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt > 1:357461/1‑150 (MQ=34) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg < 2:972896/150‑1 (MQ=37) ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaa < 1:238075/150‑1 (MQ=38) cGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaatt < 1:498112/148‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 2:430079/1‑150 (MQ=255) gTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg > 1:5382/1‑131 (MQ=31) ttGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 2:5382/131‑1 (MQ=32) tGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg > 2:448819/1‑148 (MQ=255) cTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGa < 2:925558/150‑1 (MQ=255) cGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGTGGAATTGGGAATTAATTCTTGAAGAc < 1:28080/148‑1 (MQ=255) gCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaa < 1:750191/150‑1 (MQ=255) cAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa < 1:956617/150‑1 (MQ=255) cAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa < 1:405342/150‑1 (MQ=255) ttCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGcc < 2:820523/150‑1 (MQ=255) aaTCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt > 2:836828/1‑150 (MQ=255) ggtctagggCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 2:168864‑M1/70‑1 (MQ=255) cGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa > 2:212414/1‑150 (MQ=255) ggc‑ggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAt < 1:492577/150‑1 (MQ=255) | TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGG‑CGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAT > CP009273/360033‑360330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |