| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,977,727 | A→C | 100% | I275R (ATA→AGA) | araG ← | fused L‑arabinose transporter subunits of ABC superfamily: ATP‑binding components |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,977,727 | 0 | A | C | 100.0% | 165.5 / NA | 48 | I275R (ATA→AGA) | araG | fused L‑arabinose transporter subunits of ABC superfamily: ATP‑binding components |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (23/25); total (23/25) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATC > CP009273/1977580‑1977872 | ttACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGActtctt > 1:138044/1‑150 (MQ=255) tACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGActtctt < 1:757140/149‑1 (MQ=255) tcgatcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTacg < 2:454612/149‑1 (MQ=255) gatcgGCTGTTGGTCGATATAAACCTGCCCGGCGGTGATTTGCGTCCCGCCAAAAATGCCTTTCATTAATTCGCTGCGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTacgcac < 2:401298/150‑1 (MQ=255) gatcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTTATTCGCTACGCCCCCCCCCCACCCGACCAAACAACCCCAAAAATTTC‑CCACTTCGAAACGCCAAACTTCTTTGCGTacccac > 1:390575/1‑150 (MQ=255) cgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCCACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGcc > 1:592742/1‑150 (MQ=255) tGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGt > 1:660928/1‑150 (MQ=255) cGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCCACGCCCCCCCCCCACCAGAACAAAC‑AGCCCAAAAAATTTACCACCGCGAAACGCCAGACTTCTTTGCGGACGCACGCCCGGGGCtttt > 1:814154/1‑148 (MQ=255) atatAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCCACCAAACCAAAA‑AGCCCAACAATTTCACCACCGCGAAACCCCAGACTTCTTGGCGTACGCACGCCCGGGGCTTTcac > 2:958820/1‑149 (MQ=255) aaCCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCAt < 2:110124/149‑1 (MQ=255) aaCCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCAt < 1:958820/149‑1 (MQ=255) aaCCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATc < 1:475367/150‑1 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCCAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCCGACTTCTTTGCGTACGCACGCCCGGGGCTTTTCCAGCATCa > 1:966845/1‑149 (MQ=255) cTGACCGGCGGTGATTTTCGTCCCGCCAAACCTGCCTTTCATTAATTCGCTACGCCCCGCCCCTTCCCCACCAAAC‑AGCCCAACAATTTTACCCCCCCGAACCGCCACACTTCTTGGCGTACCCACGCCCGGTGCTTTcaccacctc > 2:820232/1‑141 (MQ=255) cTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAg < 1:25211/150‑1 (MQ=255) cTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAg < 2:521167/150‑1 (MQ=255) ggcggTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAg > 2:827021/1‑150 (MQ=255) cggTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGgc < 1:520269/150‑1 (MQ=255) tGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGct < 1:172517/150‑1 (MQ=255) aTTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGctcc > 2:129476/1‑150 (MQ=255) aaCATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTAcgc > 1:983105/1‑150 (MQ=255) aCATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTAcgcg > 2:106723/1‑150 (MQ=255) gCCTTTCATTAATTGGCTACGCCCCGCCCCTTCCAGACCAATC‑AGCCCAACAATTTCTCCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAACACGTAGGCGCTCCTCGCCATAACTACGCGGTTg < 2:774786/150‑1 (MQ=255) gCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTg > 2:802670/1‑150 (MQ=255) cTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGc > 2:446063/1‑149 (MQ=255) tCATTAATTCGCTCCGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAg < 2:6221/149‑1 (MQ=255) aTTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGcc < 1:799039/149‑1 (MQ=255) aaTTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCg > 1:370950/1‑147 (MQ=255) aTTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCg > 2:738167/1‑146 (MQ=255) aTTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAg < 2:215304/149‑1 (MQ=255) gCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATc < 2:390575/150‑1 (MQ=255) ccgccccTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGt < 1:734211/150‑1 (MQ=255) ccccTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTcgc < 2:817927/150‑1 (MQ=255) ccTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTATGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCgcgc > 1:85976/1‑150 (MQ=255) cTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGcc > 1:493369/1‑150 (MQ=255) aCCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGccc > 2:332938/1‑149 (MQ=255) ccAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGccc < 2:814154/148‑1 (MQ=255) gACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCa > 2:440451/1‑150 (MQ=255) gACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCa > 1:897669/1‑150 (MQ=255) ccAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGGCCATc < 2:138044/150‑1 (MQ=255) aC‑AGCCCAACAATTTCCCCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCt < 2:592742/150‑1 (MQ=255) aC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCt < 1:802670/150‑1 (MQ=255) c‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTg > 2:374574/1‑150 (MQ=255) aTTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGcgcg > 1:99044/1‑150 (MQ=255) cGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAcc < 2:370950/150‑1 (MQ=255) aaCCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctg < 1:827021/150‑1 (MQ=255) ccGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctgct < 2:216656/150‑1 (MQ=255) cGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctgctg < 1:106723/150‑1 (MQ=255) cAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCa > 1:380688/1‑149 (MQ=255) aCTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATc < 1:738167/150‑1 (MQ=255) | TTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAAC‑AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATC > CP009273/1977580‑1977872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |