| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,960,118:1 | +C | 60.8% | coding (1676/2247 nt) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,960,118 | 1 | . | C | 60.8% | 164.4 / 120.1 | 74 | coding (1676/2247 nt) | ptsP | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| Reads supporting (aligned to +/- strand): ref base . (15/14); new base C (24/21); total (39/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGATGCGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCTGATCGGCATGT > CP009273/2959969‑2960265 | ccAGATGCGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑a > 2:605611/1‑150 (MQ=255) cAGATGCGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑c < 2:296315/150‑1 (MQ=255) gATGCGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑cc > 2:937335/1‑149 (MQ=255) tGCGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑cccat > 1:880154/1‑147 (MQ=255) cGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑cccatc < 1:264713/149‑5 (MQ=255) cagcaTAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCaa > 2:55777/1‑150 (MQ=255) gcaTAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCaa > 1:515961/1‑149 (MQ=255) aTAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCaa > 1:1057119/1‑147 (MQ=255) cATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATAtt > 2:318365/1‑148 (MQ=255) gACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGtt < 1:831687/149‑1 (MQ=255) aCGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTg > 1:406644/1‑150 (MQ=255) ggCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGccc > 1:451266/1‑150 (MQ=255) cACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCg < 1:513458/150‑1 (MQ=255) aCTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCg > 1:63569/1‑149 (MQ=255) tCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGc > 2:162021/1‑150 (MQ=255) ccAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCgg > 2:186684/1‑150 (MQ=255) ccAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTATG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAg < 2:600854/148‑1 (MQ=255) gCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCa > 1:719433/1‑150 (MQ=255) atgatgCCGATACGAGGTTTGGGAATGTCGTAACCGATCATCTCCTCGACGTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCAt > 1:833961/1‑148 (MQ=255) gatgCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAg > 1:85954/1‑149 (MQ=255) atgCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAg < 1:319720/149‑1 (MQ=255) atgCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCa < 2:627606/150‑1 (MQ=255) atgCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCCCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGc < 1:882009/150‑1 (MQ=255) tgCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCa < 1:506589/150‑1 (MQ=255) tgCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCAc < 2:656762/150‑1 (MQ=255) gATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACgcag < 1:759870/150‑1 (MQ=255) aTACGTGGCTTGGGAGTTTCGTAACCGATCATCTCCTCGCCTTCACGACCGGCACGTTCAATCAGTCCGCGTGCTTCATCAACTTCATCGAGGCTTGAG‑A‑CC‑ATCCGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACgcag > 2:470221/1‑149 (MQ=255) aCGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACgcagca > 2:313739/1‑150 (MQ=255) gTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATc < 1:815128/150‑1 (MQ=255) ggTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGc > 1:377071/1‑150 (MQ=255) gTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGccc > 1:448822/1‑150 (MQ=255) ggAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCAc > 2:861521/1‑150 (MQ=255) gAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCAcc > 1:470961/1‑150 (MQ=255) gAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCAcc < 2:1015339/150‑1 (MQ=255) aTTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTgg < 1:1009300/150‑1 (MQ=255) tttCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTgg < 1:390516/150‑1 (MQ=255) cGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATAAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGAt < 1:846626/149‑1 (MQ=255) gTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCa < 2:931201/149‑1 (MQ=255) aCCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCaag > 1:105894/1‑149 (MQ=255) gATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCaag > 2:745225/1‑146 (MQ=255) gATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAagaaga < 1:122639/150‑1 (MQ=255) atcatcTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGAtc < 1:1037876/150‑1 (MQ=255) tcatcTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCTCCTGGATCAAGAAGAtc > 2:653347/1‑150 (MQ=255) tcatcTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGAtc < 2:816881/150‑1 (MQ=255) catcTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGAtct > 1:283593/1‑150 (MQ=255) atcTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGAtctc < 2:1057119/150‑1 (MQ=255) atcTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTcc > 2:5539/1‑150 (MQ=255) tctcCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTcc > 1:469181/1‑150 (MQ=255) ctcGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCgg < 1:605611/147‑1 (MQ=255) aCTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATc < 2:38840/150‑1 (MQ=255) ttCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATc > 2:246918/1‑148 (MQ=255) cGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCg > 2:247900/1‑149 (MQ=255) cGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGt > 2:442640/1‑149 (MQ=255) gTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTaa > 2:424567/1‑150 (MQ=255) gTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTaa > 1:74717/1‑150 (MQ=255) ccGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAAt > 2:540819/1‑150 (MQ=255) cGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATg < 1:425134/149‑1 (MQ=255) cACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGaa > 2:921187/1‑150 (MQ=255) ttCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATcc < 2:377071/150‑1 (MQ=255) aaTCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCAc < 1:619278/150‑1 (MQ=255) aaTCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCAc < 2:85954/149‑1 (MQ=255) aTCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACg < 1:527565/150‑1 (MQ=255) cAGGCGGCTTGCTTCATCAACTTCATCGTGGCGTCTGCG‑GC‑ATCGGTAACAGAATATTCAGGTTGCCCGTATCGGCATTAGCACGCAGCATCACCCCCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGCAATGCGAATCCCAccct > 2:474302/1‑147 (MQ=255) aGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGcc < 1:318365/149‑1 (MQ=255) ggcggcGTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCaa > 1:477038/1‑150 (MQ=255) cggcgTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAAcc > 2:478162/1‑150 (MQ=255) ggcgTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAAccc < 1:845467/150‑1 (MQ=255) gcgTGCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCa < 2:515961/150‑1 (MQ=255) gCTTCATCAACTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCa > 1:406091/1‑150 (MQ=255) cTTCATCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCAGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTctct > 2:473288/1‑150 (MQ=255) cATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTc < 1:55777/148‑1 (MQ=255) aTCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCg < 2:287765/149‑1 (MQ=255) aTCGAGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCg < 1:910986/149‑1 (MQ=255) tCGAGGCTTGTG‑A‑CCTATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCt < 2:266335/150‑1 (MQ=255) aGGCTTGTG‑ACCC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCTGAt > 2:854386/1‑150 (MQ=255) aGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGGGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCTGATc < 1:470221/150‑1 (MQ=255) ggtttGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACACAGGCATGGATTCTCTTCGATGATCg > 2:338098/4‑150 (MQ=255) gCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCTGATCgg < 2:448822/150‑1 (MQ=255) g‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCTGATCGGCATGt > 1:165548/1‑149 (MQ=255) | CCAGATGCGGCAGCATAAATACCATTGACGGCACTTCCAGCATGATGCCGATACGTGGTTTGGGAATTTCGTAACCGATCATCTCCTCGACTTCACGTCCGGCACGTTCAATCAGGCGGCGTGCTTCATCAACTTCATCGAGGCTTGTG‑A‑CC‑ATCGGCAACAGAATATTCAGGTTGCCCGTAGCGGCATTAGCACGCAGCATCGCCCGCACCTGGATCAAGAAGATCTCCGGCTGATCGAGCGTAATGCGAATCCCACGCCAACCCAGGCATGGATTCTCTTCGCTGATCGGCATGT > CP009273/2959969‑2960265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |