New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 1342452 = | 43 (0.700) | 5 (0.090) | 5/262 | NT | 10.4% | coding (718/1935 nt) | rnb | ribonuclease II |
? | CP009273 | = 1663663 | 45 (0.770) | coding (187/894 nt) | ynfL | LysR family putative transcriptional regulator |
GTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGC > CP009273/1663515‑1663807 | gTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCt > 2:539484‑M2/1‑149 (MQ=255) gTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCt < 2:533695‑M2/150‑2 (MQ=255) aTCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCtgc < 1:372847‑M2/150‑4 (MQ=255) cacCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGt < 2:691424/150‑1 (MQ=255) gCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAg > 1:703747/1‑149 (MQ=255) tAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATacac < 1:701347/150‑1 (MQ=255) tAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATacac > 2:581149/1‑150 (MQ=255) gAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGAt < 1:502793/150‑1 (MQ=255) acgaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTc < 1:1041157/150‑1 (MQ=255) cgaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCg > 2:30903/1‑150 (MQ=255) gaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGt < 1:252101/150‑1 (MQ=255) gaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGt > 2:523200/1‑150 (MQ=255) gTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGcc < 1:104589/150‑1 (MQ=255) gTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGc > 1:62859/1‑149 (MQ=255) tAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCtgctgccttcagcaatccacgcggttggatcggcaatc < 1:992068‑M2/150‑39 (MQ=255) tAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGc > 2:972177/1‑148 (MQ=255) aaaCCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCtgctgccttcagcaatccacgcggttggatcggcaatcg > 1:634373‑M2/1‑110 (MQ=255) aaaCCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCcagc < 1:237475/150‑1 (MQ=255) aaTGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCg > 2:22133/1‑150 (MQ=255) tGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCggg > 1:64357/1‑150 (MQ=255) gcAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCAc > 1:637769/1‑150 (MQ=255) cAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCtgctgccttcagcaatccacgcggttggatcggcaatcgccacaatcagct < 2:1000945‑M2/150‑52 (MQ=255) aaCTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCAcc > 1:114776/1‑149 (MQ=255) cTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAAt > 1:826498/1‑150 (MQ=255) ccccGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAAttt < 1:912695/149‑1 (MQ=255) gCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGc < 2:939105/150‑1 (MQ=255) cTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCTGGCACCAATTTGTTGCt < 1:523200/150‑1 (MQ=255) cTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCt > 1:276246/1‑150 (MQ=255) cccTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCtgctgccttcagcaatccacgcggttggatcggcaatcgccacaatcagctgaagtttgtcatccgg > 2:1041544‑M2/1‑83 (MQ=255) cccTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAgc < 1:905846/150‑1 (MQ=255) aTGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCt > 1:1032514/1‑149 (MQ=255) cAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAAt > 2:360654/1‑150 (MQ=255) aGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATc < 1:230562/150‑1 (MQ=255) tCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATctgctg < 2:345291/149‑1 (MQ=255) tCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATctgct < 1:533695/148‑1 (MQ=255) gcgAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAg < 2:372847/150‑1 (MQ=255) gAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAgcg > 1:450223/1‑150 (MQ=255) gAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAgcg > 2:62635/1‑150 (MQ=255) gCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGGCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAgcggc < 2:1032514/150‑1 (MQ=255) aGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTg > 1:765689/1‑150 (MQ=255) aTCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCTTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGaaa < 1:106715/149‑1 (MQ=255) tCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGaaaaa > 1:628838/1‑148 (MQ=255) caccaTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCtgctgccttcagcaatccacgcggttggatcggcaatcgccacaatcagctgaagtttgtcatccggcaacgccttagcgaaaagggcgtcatccatatcttct > 1:1000945‑M2/1‑45 (MQ=255) ccaTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCa < 2:64357/150‑1 (MQ=255) ccaTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAAAAtt > 1:307090/1‑148 (MQ=255) caTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAAAATTTAg > 1:391657/1‑150 (MQ=255) aTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGGGGAAAATTTAgg > 2:931224/1‑150 (MQ=255) aTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAgg < 2:903035/150‑1 (MQ=255) tAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGc < 2:329412/150‑1 (MQ=255) aGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTCGTGAAATATTTAgggg > 1:611224/1‑148 (MQ=255) gACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCgg < 2:952749/150‑1 (MQ=255) cTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTTCGAAATATTCAGGCGGGGAGCGGGGCGCCCg > 2:667025/1‑150 (MQ=255) tATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTTGGGAAAAATCACGCGGGGGGGGGCGGGCCCg > 2:112441/1‑149 (MQ=255) aaGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGCTGGGGAATATTTAGGCGGGGAGCGGCGCGCCCCCAATGCAg > 1:183910/1‑150 (MQ=255) aGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGCTGCGAAAACTTCAGGAGGGCAGCGGGGCGCCCGCAATGcccc > 1:233276/1‑147 (MQ=255) tttCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGGGAAATATTCAGGCGGGGAGCGGGGCGGCCCCAAAGCAGCCCCTcccc > 2:249449/1‑147 (MQ=255) | GTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGC > CP009273/1663515‑1663807 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |