| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,181 | G→C | 11.9% | intergenic (‑115/+480) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,181 | 0 | G | C | 11.9% | 313.0 / 4.6 | 105 | intergenic (‑115/+480) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (43/48); new base C (12/2); total (55/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.88e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 110 total aligned reads displayed.
TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAT > CP009273/360033‑360330 | tattccgcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggcg < 1:697412‑M1/2‑1 (MQ=255)tattccgcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggcg < 2:1059298‑M1/2‑1 (MQ=255) ttccgcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggcggc < 2:671397‑M1/4‑1 (MQ=255) aacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGAt > 1:918860‑M1/67‑150 (MQ=255) gcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGAt < 2:1019171‑M1/8‑1 (MQ=255) cagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGAttt > 1:485566‑M1/65‑150 (MQ=255) ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTc > 1:557201‑M1/62‑150 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCCCCCCCCCCCCGGCCGGTGCTTCGCAAAG‑TTCAAAAACCCCCCCCGCGGGttttttc > 1:110743/1‑146 (MQ=25) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCCCGGCCGGTGCTTCCCAACG‑TTCAAATCCCCCCCCCGCGGGTTTGTcc > 1:8206/1‑150 (MQ=25) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTa < 1:973151/150‑1 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTa < 1:321110/150‑1 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCCGCCCGTGCTTCCCCACGCTCCAAACCCCCCCCCGCCGGTTTTTTctt > 2:1021208/1‑148 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCGGCCGCTTCTTCGCAAAG‑TTCCAAACCCCCCCCGGCGGGTTTGTCCTAcc > 1:679494/1‑149 (MQ=25) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCa > 1:1021208‑M1/55‑150 (MQ=255) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCACCCCCCCGGCCGGTGCTTCGCCACG‑TTCAAAAACCCTCCCCGCGGGGTTGTGCTACTc < 2:725094‑M1/95‑1 (MQ=255) agaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACt < 1:295817‑M1/18‑1 (MQ=255) agaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACt < 1:927183‑M1/18‑1 (MQ=255) agaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACt > 2:101035‑M1/132‑149 (MQ=255) aTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCCCGGCCGTTGCTTCGCAACG‑TTCAAATCCGCCCCCCGCGGGTTTGTCCTACt > 1:772160/1‑148 (MQ=25) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAg < 2:579129/150‑1 (MQ=255) aaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCCCCCGGCCGTTGCTTTCCAACG‑GTCAAATCCGCTCCCCGCGGGTTTTTTCTActccc < 2:1034543‑M1/97‑3 (MQ=255) aaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAg > 1:868600‑M1/54‑150 (MQ=255) aatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAg < 1:977343‑M1/21‑1 (MQ=255) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc > 2:763561‑M1/48‑150 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc < 2:132856/149‑1 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc < 1:713371/149‑1 (MQ=255) taattcgctctgaaactgatggcgtaaaaggaaagaaagaagaacctttataccatgtcaagaagtaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCg < 1:1028386‑M1/28‑1 (MQ=255) taattcgctatgaaaatgatggcgtagaagagaagaaataataccatatataccatgtcccgtattaccgcctttgagtgagatgataccgctagacgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGc > 1:911900‑M1/123‑149 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCGTTGCTTCGCAAAG‑TTCAAATCCGCTCCCCGCGGATTTTTCCTACTCAGGAGAGCGTTCa > 1:28180/1‑150 (MQ=21) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCCCCCGGCCGTTGCTTCGCAAAG‑TTCAAATCCGCTCCCCGCGGGTTTGTCCTTCTCAGGGGAGCGGTCAc > 1:508459/1‑150 (MQ=18) cgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc < 1:1001021‑M1/33‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCCCCCCCCCGGCCCTTGCTTTGCAAAG‑GTTAAATCCCCCCCCCGCGGGTTTTTCCCACTCCAGGGAGCGGTcccc > 2:905258/1‑150 (MQ=16) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCACCCCCCGCGCCCTTGGTTCCCAACA‑TTCAAATCCGCCCCCCGCGGGGTTGTCCTACCCAGGAGAGCGTTCACCCac > 1:802288/1‑149 (MQ=18) actgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGaca > 1:514288‑M1/37‑150 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa < 2:391400/150‑1 (MQ=255) aaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa < 1:965562‑M1/40‑1 (MQ=255) aactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa < 1:675990‑M1/40‑1 (MQ=255) tgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaacaa < 1:534460‑M1/43‑1 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca > 1:358203‑M1/30‑150 (MQ=255) aGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAaacaac < 1:324052/149‑1 (MQ=255) tggcgtagaagcgaagaaataataccctttataccatgttccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaacaa < 2:276626‑M1/43‑1 (MQ=255) tcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGa > 2:772160‑M1/27‑149 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGTCCTGCCCCCCCCCCCCCCCGCCGCTGCTTTTCAACG‑TTCAAATACCCCCCCCGCGGGGTTTTCCTCCTCCCGAGAGCGGTTTCCGcccaacaaacaa > 2:631983/1‑145 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATTGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGAt > 2:183484/1‑149 (MQ=255) tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa < 1:667217/149‑1 (MQ=255) tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa < 2:273143/149‑1 (MQ=255) gcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa > 1:1019171‑M1/102‑150 (MQ=255) gtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa < 2:562546‑M1/50‑1 (MQ=255) gaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg > 2:421897‑M1/97‑150 (MQ=255) aagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg < 1:505394‑M1/54‑1 (MQ=255) aagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg < 1:1053925‑M1/54‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa < 2:369342/150‑1 (MQ=255) gatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg > 1:725094‑M1/16‑149 (MQ=255) atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg > 2:902484‑M1/15‑149 (MQ=255) aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc < 1:747962/150‑1 (MQ=255) aaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGcc < 1:305801‑M1/61‑1 (MQ=255) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc > 2:843657‑M1/8‑149 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 1:123600/150‑1 (MQ=38) ggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt > 1:693744‑M1/7‑150 (MQ=255) aataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:666670‑M1/67‑1 (MQ=255) gaattaaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCGCTGCTTTGCAACG‑TTCAAATCCCCCCCCCCCGGGTTTTTTCTACCCAGGGGGGCGGTCACCGACAAACAACAGACAAAAAGAAAAGCGCAGTCttt > 2:918860/6‑150 (MQ=2) ataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt > 2:1053925‑M1/83‑150 (MQ=255) taccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt < 1:1018742‑M1/69‑1 (MQ=255) ccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCCCGGCCGTTGCTTCCCAACG‑TTCAAATCCCCTCCCCGCGGGTTTTTTCTACTCAGGAGAGCGTTTACCGACAAAAAAAAAATAAAACGAAAAGCCCAGTCtttt > 1:819042/1‑149 (MQ=11) aattaaTTCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCTCCCGGCCGTTGCTTCTCAACG‑TTCAAAACCACTCCCCGCGGGGTTTTTCTACTCAGGAGAGCGGTTACCGACAAACAAAAGAAAAAAAAAAAAGACCAGTCtttt > 2:715020/5‑149 (MQ=2) cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1025007/149‑1 (MQ=35) ccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg > 1:442860‑M1/80‑150 (MQ=255) ctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc < 1:367027‑M1/73‑1 (MQ=255) aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTg < 1:838730/150‑1 (MQ=32) aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTg < 2:28180/150‑1 (MQ=32) tataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 2:167738‑M1/74‑1 (MQ=255) taccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 2:546305‑M1/73‑149 (MQ=255) taccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 2:87247‑M1/78‑1 (MQ=255) ccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 2:117343‑M1/80‑1 (MQ=255) atgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt < 1:67505‑M1/82‑1 (MQ=255) atgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 2:867589‑M1/69‑150 (MQ=255) gtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg < 1:300381‑M1/84‑1 (MQ=255) ttaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt > 1:403282‑M1/59‑149 (MQ=255) cgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtttgctg > 1:833401‑M1/55‑147 (MQ=255) cgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATg > 1:833404‑M1/55‑150 (MQ=255) gcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGc < 2:428022‑M1/97‑1 (MQ=255) cctttgagtgagctgatgccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGcc > 1:673770‑M1/53‑150 (MQ=255) ctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt < 1:719407‑M1/99‑1 (MQ=255) cccGCCCCCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:148880/148‑1 (MQ=11) cccGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 2:679494/148‑1 (MQ=11) ccGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa > 1:855477/1‑150 (MQ=32) gCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt > 1:660989/1‑150 (MQ=34) gggCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaattaat > 1:281741/1‑150 (MQ=255) ccGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 1:592401/1‑150 (MQ=255) ccGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt < 1:80602/150‑1 (MQ=255) cTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGa < 1:961/150‑1 (MQ=255) ttCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGAc > 1:320078/1‑150 (MQ=255) ttCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGAc > 2:275366/1‑150 (MQ=255) cGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGAc < 2:887896/148‑1 (MQ=255) gCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGa > 2:340614/1‑149 (MQ=255) cAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTc > 1:425999/1‑150 (MQ=255) aaTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt > 1:467985/1‑150 (MQ=255) aaTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt > 2:517396/1‑150 (MQ=255) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCt < 2:65247/150‑1 (MQ=255) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAt < 2:855477/150‑1 (MQ=255) | TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAT > CP009273/360033‑360330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |