New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	320127 =	33 (0.510)	30 (0.470)	29/276	NT	47.6%	coding (659/696 nt)	ykgG	LutC family protein; putative electron transport chain YkgEFG component
	?	CP009273	376716 =	NA (NA)					intergenic (‑1/‑91)	yaiX/insC1	pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA

GAGCAGCATAACCATGACGGAACGGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/320268‑320127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  CP009273/376716‑376857                                                                                                                                                                                                                                                                                              GAGCAGCATAACCATGACGGAACGGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGG                                                                                                                                        >  2:1067156/1‑150      GCATAACCATGACGGAACGGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCC                                                                                                                                   >  1:21356/1‑150        ATAACCATGACGGAACGGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTG                                                                                                                                 <  2:758252/150‑1                   GGAACGGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGA                                                                                                                       >  1:746075/1‑149                        GGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCA                                                                                                                 <  1:337093/150‑1                              AAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCCTATGCCTTCTTCAAGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                            <  2:777557/149‑1                                 TCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT                                                                                                        <  1:385805/150‑1                                   AGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA                                                                                                       <  1:927093/149‑1                                                    ATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                                                                     >  1:722566/1‑150                                                     TTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAT                                                                                    <  1:815677/150‑1                                                        TCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                                                                  <  1:446837/149‑1                                                         CAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                                                                  >  2:800354/1‑148                                                                GTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTT                                                                           <  2:21356/148‑1                                                                      CTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                                                                   <  1:1047017/150‑1                                                                        TCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT                                                                  >  1:729325/1‑149                                                                         CTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCA                                                                >  2:903923/1‑150                                                                            CAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCA                                                                <  2:155712/147‑1                                                                             AGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                                                            <  2:789933/150‑1                                                                             AGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                             >  1:158832/1‑149                                                                                TTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA                                                         <  2:4532/150‑1                                                                                   ATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA                                                        >  1:968815/1‑148                                                                                           ACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG                                              <  2:729325/150‑1                                                                                               CATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAT                                            <  1:927286/148‑1                                                                                                      CTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGG                                   >  1:253202/1‑150                                                                                                       TCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA                                      <  2:722566/146‑1                                                                                                         TCAACAATCCTCAATAATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG                                >  1:154648/1‑150                                                                                                                        AATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG                 >  1:1008773/1‑150                                                                                                                         ATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGC                >  2:176081/1‑150                                                                                                                         ATCAGATACACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGC                >  1:150853/1‑150                                                                                                                                 CACCGCTTTCACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCAC         <  2:158832/149‑1                                                                                                                                           ACCGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  1:405991/1‑146                                                                                                                                                                                                                                                                                              GAGCAGCATAACCATGACGGAACGGGGTTAAGTCAGGTTGTCCTAAACGCTATTTTCAACCTCGTATGCCTTCTTCAGGTTTATGTCCAGACTTCATATCTCTCTCAACAATCCTCAATAATCAGATACACCGCTTTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/320268‑320127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  CP009273/376716‑376857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.