Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 2,770,391 IS2 (+) +5 bp 47.0% coding (156‑160/201 nt) ypjJ → uncharacterized protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2770391 =31 (0.500)23 (0.360) 20/276 NT 41.7% coding (156/201 nt) ypjJ uncharacterized protein
?CP009273 2989720 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region
* ? CP009273 = 277039531 (0.500)32 (0.500) 31/276 NT 49.9% coding (160/201 nt) ypjJ uncharacterized protein
?CP009273 = 2991050 NA (NA)noncoding (1/1331 nt) IS2 repeat region

ACCAGACGTGCTCCCAGGCGCGGCGTGATATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2770535‑2770391
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCT  >  CP009273/2989720‑2989864
                                                                                                                                                                                                                                                                                                  
ACCAGACGTGCTCCCAGGCGCGGCGTGATATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGAT                                                                                                                                              >  2:110213/1‑150
  CAGACGTGCTCCCAGGCGCGGCGTGATATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTT                                                                                                                                            <  1:1058424/150‑1
  CAGACGTGCTCCCAGGCGCGGCGTGATATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTT                                                                                                                                            <  1:368044/150‑1
             CCAGGCGCGGCGTGATATCTCGCTGCAGGCCCCATGTGGGGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATT                                                                                                                                 >  1:555428/1‑150
                        GTGATATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCT                                                                                                                      >  1:756375/1‑150
                             ATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT                                                                                                                 >  1:38118/1‑150
                             ATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT                                                                                                                 >  1:924232/1‑150
                              TCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT                                                                                                                 <  1:849089/149‑1
                                  GCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACT                                                                                                             <  2:606172/149‑1
                                           CCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTA                                                                                                   >  1:910475/1‑150
                                                 TGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCC                                                                                             <  2:555428/150‑1
                                                   GTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCC                                                                                            <  2:1016094/149‑1
                                                    TGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGC                                                                                          >  1:387172/1‑150
                                                                           ATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGC                                                                     >  1:243962/1‑148
                                                                            TTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA                                                                   <  1:765187/149‑1
                                                                                CAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGA                                                               >  2:327354/1‑149
                                                                                 AGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGAT                                                              >  2:299899/1‑149
                                                                                                    CAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGA                                          >  1:638505/1‑150
                                                                                                         AAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCA                                     >  1:1094542/1‑150
                                                                                                          AGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCAT                                    <  2:38118/150‑1
                                                                                                          AGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCAT                                    <  1:110213/150‑1
                                                                                                             ATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCG                                 >  1:970409/1‑150
                                                                                                                                TGCGGCGTTCGGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCT              >  2:617737/1‑150
                                                                                                                                          GGCGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTT    >  2:341698/1‑150
                                                                                                                                            CGTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCT  >  2:1075698/1‑150
                                                                                                                                                                                                                                                                                                  
ACCAGACGTGCTCCCAGGCGCGGCGTGATATCTCGCTGCAGGCCCCATGTGGTGTTGCTCATTCATAACCTCTTTATTGTCAGTTCAGGGTGATACTCATCAGTCAAGCATACGGTCCGCTGCGGTCCTGCGGCGTTCGGCGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2770535‑2770391
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCT  >  CP009273/2989720‑2989864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.