| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 4,053,617 | IS4 (+) +12 bp | 18.1% | intergenic (+27/‑179) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4053617 = | 93 (1.590) | 17 (0.260) | 17/276 | NT | 14.3% | intergenic (+27/‑190) | typA/yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 4491907 = | NA (NA) | noncoding (1426/1426 nt) | IS4 | repeat region | |||||
| * | ? | CP009273 | = 4053628 | 93 (1.590) | 24 (0.370) | 24/276 | NT | 19.1% | intergenic (+38/‑179) | typA/yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 4493332 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||
CGCCAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4053761‑4053617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGC > CP009273/4491907‑4492047 CGCCAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATG < 2:1080173/150‑1CGCCAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAAT < 2:328928/149‑1 AAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAA > 2:772515/1‑144 AAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAAT < 1:772515/144‑1 ATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAAC < 2:354514/150‑1 AACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTG < 1:523253/149‑1 ACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTT > 2:992525/1‑150 ATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTG > 2:48861/1‑150 TGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGG > 2:884950/1‑150 AGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCA < 1:1056013/150‑1 TCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGG < 1:31055/148‑1 TGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCC > 1:694853/1‑150 TAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTAC < 1:499969/150‑1 AACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGAGCTGTGGGGTATTTCCAGGGCCTCTCCTTTAC > 2:772050/1‑149 AGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTC > 1:561323/1‑150 AGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTC < 1:210655/150‑1 ATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGT < 2:632782/150‑1 ACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCAC < 1:48861/148‑1 GGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTC < 2:869888/150‑1 CATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCG < 1:992525/150‑1 ATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGC > 2:914946/1‑150 CGCCAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4053761‑4053617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGC > CP009273/4491907‑4492047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |