New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	15387 =	NA (NA)	7 (0.110)	7/268	NT	28.0%	noncoding (1/1345 nt)	IS186	repeat region
	?	CP009273	= 454251	18 (0.290)					intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

CGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGC  >  CP009273/15240‑15533                                                                                                                                                    |                                                                                                                                                    cgcgCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGCAAAGTGGCGGGGATCACTcc                                                                                                                                                   <  1:809303/150‑1 (MQ=255)   cgcTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCa                                                                                                                                                 <  2:956827/150‑1 (MQ=255)    gcTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCa                                                                                                                                                 >  1:453915/1‑149 (MQ=255)            agCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTa                                                                                                                                       <  2:815515/150‑1 (MQ=255)              cttcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAAc                                                                                                                                     <  1:224454/150‑1 (MQ=255)                 cttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACt                                                                                                                                    <  1:136232/148‑1 (MQ=255)                    tGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCTAAG‑CGCTAACTTaaag                                                                                                                               >  1:250392/1‑148 (MQ=255)                          tgtgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTtgtg                                                                                                                         <  2:762701/150‑1 (MQ=255)                              aagaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTa                                                                                                                      <  1:532522/149‑1 (MQ=255)                               agaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCATAG‑AGGTAAATTAAAGGGTGTggggtt                                                                                                                    >  2:546469/1‑146 (MQ=255)                                 aagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTAc                                                                                                                  <  1:1091763/150‑1 (MQ=255)                                    ttttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                               <  1:22728/150‑1 (MQ=255)                                          gacgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTTACTTAAGGGTTGTGGTATTACGCCTGata                                                                                                          <  2:727454/149‑1 (MQ=255)                                             gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAG‑AGCTAACTTAAGGGGTGGGGGGTTTCGCCCGGTTTGAt                                                                                                      >  1:693393/1‑150 (MQ=255)                                              acCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTAACTCCCCTAAA‑AGCTGAATTAAAGGGTGGGGGATTAAGGCTGGTATGaat                                                                                                     >  2:233326/1‑148 (MQ=255)                                              acCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                                                                                                     <  1:747082/150‑1 (MQ=255)                                               ccTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt                                                                                                    <  1:752995/150‑1 (MQ=255)                                               ccTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt                                                                                                    <  1:66125/150‑1 (MQ=255)                                                cTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACCCCCCTAAA‑CGCTAACTTAAAGGGTGTGGGGTTACGCCTGATATGAttt                                                                                                    >  1:697894/1‑149 (MQ=255)                                                    cccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt                                                                                               <  1:1088945/150‑1 (MQ=255)                                                        cTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg                                                                                           <  1:539249/150‑1 (MQ=255)                                                           aCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                                                                                         <  2:447784/149‑1 (MQ=255)                                                             cTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAA‑CGCTCACTTAAAGGGTGTGGGGTTAAGCCTGATATGATTTTAAGTGCCGATGa                                                                                       >  1:627272/1‑149 (MQ=255)                                                                cccAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa                                                                                   <  2:1006744/150‑1 (MQ=255)                                                                   aaaaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAA‑AGCTAACTTTAGGGGTGTGGGATTACGCCTGGTATGATTTTAAGTGCCGATGAAATActc                                                                                >  1:84034/1‑150 (MQ=255)                                                                       gCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCCATCCCCCAAG‑AGCTAACATTAGCGGTGTGGGATTTTGCCTGCTGTTATTTTAAATGCCCATGAATTACtctctc                                                                            >  2:813329/1‑148 (MQ=255)                                                                       gCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                            <  2:666265/150‑1 (MQ=255)                                                                            cccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATa                                                                        <  2:1049468/149‑1 (MQ=255)                                                                             ccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                      <  2:325658/150‑1 (MQ=255)                                                                              cGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAA‑CGCTAACTTAAGGGGTGTGGGATTAAGCCTGATATGATTTTACGTGCCGATGAATTAATCTCACGATaaat                                                                     >  1:452308/1‑148 (MQ=255)                                                                              cGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACt                                                                     <  2:839210/150‑1 (MQ=255)                                                                               gTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAA‑CGCTAACTTAAAGGGTGTGGGATTTCGCCTGATATGATTTTACGTGCCGATGAATTACTCTCACCATAAATg                                                                    >  1:1070210/1‑150 (MQ=25)                                                                                tGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGAGGCGGGGGTGACTCCCTTAAGTTGCTAA‑TTAAAAGACGCGGTATTACTCCTGAAATTTTTTAAAATGCGCAGGAAATACTCTTACGATTAcatg                                                                   >  1:382651/1‑147 (MQ=255)                                                                                   gCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                                                <  2:528129/150‑1 (MQ=255)                                                                                            ggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTg                                                       <  2:453915/150‑1 (MQ=255)                                                                                                aaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGccc                                                   <  1:340110/150‑1 (MQ=255)                                                                                                aaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCAATCCCCTAAA‑CGCTAACTTAAGGGGTGTGGTGTTACGCCTGGTATTATTTTAAATGGCGATGAAATACTCTCACAATAAATGGGCAGCAATTTTTGccc                                                   >  2:103707/1‑150 (MQ=255)                                                                                                 aaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCCAACTTAAGGGGTGTGGGATTACGCCCGATATGATTTAACGTGCCGATGAAATACTCTCACGATAAATGGTCAGCAATTCTTGcccc                                                  >  1:581989/1‑149 (MQ=21)                                                                                                                 aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaa                                  <  1:673634/150‑1 (MQ=255)                                                                                                                      tGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCTAAA‑CGCTAACTTAAAGGGTGTGGGATTAAGCCTGATATGATTTAAAATGCCGATGAATTACTCTCACGATAAATGGGCAGCAAATTTTGCCCCTATTTGTAAACCCgaagaaat                             >  1:325965/1‑148 (MQ=17)                                                                                                                      tGCGAGCACCTGTAAAGTGGCGGGGGAATCGCCCATAAG‑CGCGTACACAAGGGTTGTGGGGTTTAGGCTGCATTGATATTACCTGGCGACCGAGTAATCTCACCATAAATGGATCGCACTTCTGGCGCATATTTGTAAACGCGCAGAAc                              >  2:167515/1‑149 (MQ=255)                                                                                                                          aGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAt                         <  1:965719/150‑1 (MQ=255)                                                                                                                           gCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                        <  1:871438/150‑1 (MQ=255)                                                                                                                             aCCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                      <  2:250392/150‑1 (MQ=255)                                                                                                                             aCCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                      <  2:1070210/150‑1 (MQ=255)                                                                                                                               cTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTc                    <  1:372802/150‑1 (MQ=255)                                                                                                                               cTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTc                    <  2:627272/150‑1 (MQ=255)                                                                                                                                         gCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAt          <  2:382651/150‑1 (MQ=35)                                                                                                                                         gCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAt          <  2:1060102/150‑1 (MQ=35)                                                                                                                                           ggggATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGc        <  2:320630/150‑1 (MQ=34)                                                                                                                                            gggATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGcc       >  1:936262/1‑150 (MQ=34)                                                                                                                                                tCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCgggg   >  2:680684/1‑150 (MQ=32)                                                                                                                                                tCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCgggg   >  1:1766/1‑150 (MQ=32)                                                                                                                                                 cACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGc  >  1:383215/1‑150 (MQ=32)                                                                                                                                                    |                                                                                                                                                    CGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAG‑CGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGC  >  CP009273/15240‑15533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.