New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3221093	69 (1.070)	3 (0.050)	3/276	NT	4.2%	intergenic (+67/‑67)	ygjI/ygjJ	putative transporter/putative periplasmic protein
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA
Rejected: Frequency below/above cutoff threshold.

GTGGAAATACAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAC  >  CP009273/3220945‑3221241                                                                                                                                                     |                                                                                                                                                     gtggAAATACAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTg                                                                                                                                                      <  2:138665/149‑1 (MQ=255) gtggAAATACAGCAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGc                                                                                                                                                     >  1:321399/1‑150 (MQ=255)    gAAATACAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCtt                                                                                                                                                  <  1:961161/150‑1 (MQ=255)      aaTACAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTta                                                                                                                                                <  1:7521/150‑1 (MQ=255)      aaTACAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTta                                                                                                                                                >  1:335929/1‑150 (MQ=255)         aCAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTatat                                                                                                                                             >  2:872121/1‑150 (MQ=255)            gTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATAtttt                                                                                                                                          <  1:1016781/150‑1 (MQ=255)                    ataAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTa                                                                                                                                  >  1:542562/1‑150 (MQ=255)                       aaGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACaa                                                                                                                               <  2:720300/150‑1 (MQ=255)                       aaGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACaa                                                                                                                               >  2:209765/1‑150 (MQ=255)                          ggATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGa                                                                                                                            >  1:617420/1‑150 (MQ=255)                           gATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGa                                                                                                                            >  1:446905/1‑149 (MQ=255)                           gATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGAt                                                                                                                           <  2:103485/150‑1 (MQ=255)                            aTTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGAt                                                                                                                           >  2:246912/1‑149 (MQ=255)                             ttAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATa                                                                                                                          >  2:411973/1‑149 (MQ=255)                              tAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATaa                                                                                                                         >  2:586456/1‑149 (MQ=255)                                aCGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATaaaa                                                                                                                       <  2:396866/149‑1 (MQ=255)                                 cGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAgg                                                                                                                     >  2:733013/1‑150 (MQ=255)                                   gCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCt                                                                                                                   >  2:711712/1‑150 (MQ=255)                                       aaGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGt                                                                                                                 <  2:534494/148‑1 (MQ=255)                                       aaGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTAc                                                                                                               >  1:71208/1‑150 (MQ=255)                                          agCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACttt                                                                                                            >  1:1097814/1‑150 (MQ=255)                                          agCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACttt                                                                                                            <  1:29517/150‑1 (MQ=255)                                              ccATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCt                                                                                                        <  1:887131/150‑1 (MQ=255)                                              ccATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCt                                                                                                        <  1:797265/150‑1 (MQ=255)                                               cATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCtt                                                                                                       <  2:617420/150‑1 (MQ=255)                                                atatTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCtt                                                                                                       >  1:445136/1‑149 (MQ=255)                                                   ttGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAg                                                                                                    <  1:779030/149‑1 (MQ=255)                                                      aaGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCa                                                                                                <  2:808813/150‑1 (MQ=255)                                                          gACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGa                                                                                            >  2:386093/1‑150 (MQ=255)                                                          gACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGa                                                                                            >  1:328289/1‑150 (MQ=255)                                                              ccagccagCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt                                                                                        <  1:1016675‑M1/150‑63 (MQ=255)                                                                 gccggcAATGTTGATTAATCAGAATAATAAAAAATGTGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTGCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAaca                                                                                      >  2:823836/1‑149 (MQ=255)                                                                 gccagcAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGc                                                                                                   >  2:456690/1‑136 (MQ=255)                                                                 gccagcAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAaca                                                                                      >  2:879868/1‑149 (MQ=255)                                                                  ccagcAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCt                                                                                                  <  1:456690/136‑1 (MQ=255)                                                                    agcAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAAt                                                                                  >  1:422386/1‑150 (MQ=255)                                                                    agcAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAAt                                                                                  >  2:182924/1‑150 (MQ=255)                                                                       aaTGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta                                                                               >  2:957548‑M1/1‑79 (MQ=255)                                                                           ttGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAAtt                                                                            >  1:837293/1‑149 (MQ=255)                                                                              aTTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAAt                                                                         <  1:855451/149‑1 (MQ=255)                                                                                 aaGCAGAATAATAAAAAATGAGCAGGTATTTTCCCTCGTCCTGGATGAAGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCAc                                                                      <  2:948611/149‑1 (MQ=255)                                                                                  aGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACt                                                                     <  2:622472/149‑1 (MQ=255)                                                                                  aGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACt                                                                     <  1:711712/149‑1 (MQ=255)                                                                                     aGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCAc                                                                 >  2:317508/1‑150 (MQ=255)                                                                                      gAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCAcc                                                                <  1:761762/150‑1 (MQ=255)                                                                                        ataataAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCAt                                                              <  1:373002/150‑1 (MQ=255)                                                                                           ataaAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGc                                                            <  1:440373/149‑1 (MQ=255)                                                                                           ataaAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGc                                                            <  1:128692/149‑1 (MQ=255)                                                                                           ataaAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCa                                                           <  1:57661/150‑1 (MQ=255)                                                                                            taaAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATg                                                             >  1:1020986/1‑147 (MQ=255)                                                                                            taaAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCag                                                          <  1:401187/150‑1 (MQ=255)                                                                                            taaAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCag                                                          <  1:246912/150‑1 (MQ=255)                                                                                              aaaaaTGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCaga                                                         <  2:335929/149‑1 (MQ=255)                                                                                              aaaaaTGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCaga                                                         <  2:71208/149‑1 (MQ=255)                                                                                                 aaTGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCAt                                                     <  2:445136/150‑1 (MQ=255)                                                                                                      gCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACtt                                                <  2:328289/150‑1 (MQ=255)                                                                                                        aGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGc                                              >  2:441703/1‑150 (MQ=255)                                                                                                        aGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGc                                              >  1:863497/1‑150 (MQ=255)                                                                                                            aTTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGATCATTACTTGCTCTg                                          >  1:1102206/1‑150 (MQ=255)                                                                                                                        ccTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGc                                 <  2:764635/147‑1 (MQ=255)                                                                                                                         cTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTAc                              <  1:169987/149‑1 (MQ=255)                                                                                                                         cTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACg                             >  2:398486/1‑150 (MQ=255)                                                                                                                            gATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCt                          >  2:927210/1‑150 (MQ=255)                                                                                                                             aTGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCtt                         >  2:643511/1‑150 (MQ=255)                                                                                                                                   agagGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGc                   <  2:1097814/150‑1 (MQ=255)                                                                                                                                    gagGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCg                  <  2:321399/150‑1 (MQ=255)                                                                                                                                      gggAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCgg                 >  2:97480/1‑149 (MQ=255)                                                                                                                                       ggAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCgg                 >  1:775990/1‑148 (MQ=255)                                                                                                                                         aaaaTAGTTTCTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatc             <  1:957548‑M1/150‑138 (MQ=255)                                                                                                                                          aaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGga            <  2:542562/150‑1 (MQ=255)                                                                                                                                            aTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGgaga          <  1:209765/150‑1 (MQ=255)                                                                                                                                               gTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGagaag        >  1:1063436/1‑149 (MQ=255)                                                                                                                                               gTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGagaag        >  2:638121/1‑149 (MQ=255)                                                                                                                                               gTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGagaag        >  2:953121/1‑149 (MQ=255)                                                                                                                                                 ttCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGaagaag     >  1:383924/1‑150 (MQ=255)                                                                                                                                                  tCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGaagaag     >  1:805096/1‑149 (MQ=255)                                                                                                                                                    tGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAc  >  2:668602/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTGGAAATACAGTAAATATATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAC  >  CP009273/3220945‑3221241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.