| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 4,224,391 | Δ12 bp | 88.4% | coding (706‑717/1650 nt) | pgi → | glucosephosphate isomerase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4224390 | 5 (0.080) | 41 (0.720) | 37/262 | NT | 88.4% | coding (705/1650 nt) | pgi | glucosephosphate isomerase |
| ? | CP009273 | 4224403 = | 6 (0.110) | coding (718/1650 nt) | pgi | glucosephosphate isomerase | |||||
GGACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGATTGGCCTGTCGATTGTTCTCTC > CP009273/4224242‑4224536 | ggACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACt < 2:812282‑M1/150‑2 (MQ=255)ggACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACt < 1:515260‑M1/150‑2 (MQ=255) gcgGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctt < 1:295737‑M1/150‑13 (MQ=255) cgGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgcttt < 2:454762‑M1/150‑14 (MQ=255) ggAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttc < 1:81551‑M1/150‑15 (MQ=255) gAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttc > 2:640573‑M1/1‑135 (MQ=255) aaaGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGCTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaa < 1:918118‑M1/150‑28 (MQ=255) aaaCCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAg > 2:126124/1‑150 (MQ=255) aCCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagttt < 2:558412‑M1/150‑43 (MQ=255) cACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttgg < 1:627228‑M1/150‑45 (MQ=255) cTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtatt < 1:433061‑M1/150‑49 (MQ=255) tGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtatt > 2:429942‑M1/1‑101 (MQ=255) ttCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattga > 1:782345‑M1/1‑99 (MQ=255) ttCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattga < 2:647548‑M1/149‑51 (MQ=255) ggTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgc > 2:797903‑M1/1‑94 (MQ=255) ggTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatact < 2:581058‑M1/148‑55 (MQ=255) ggTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatact < 1:580848‑M1/148‑55 (MQ=255) ggTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatact < 2:833083‑M1/148‑55 (MQ=255) gTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgc > 2:908176‑M1/1‑93 (MQ=255) tAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgcca < 1:116652‑M1/150‑59 (MQ=255) cATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaaca > 1:248026‑M1/1‑89 (MQ=255) aaaaCCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttc > 2:928437‑M1/1‑84 (MQ=255) aaaCCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatg < 1:640573‑M1/146‑64 (MQ=255) aaaCCTTCACCACGCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccagagccgttggcgagtttggtattgatactgccagcatgttc < 2:595810‑M1/149‑67 (MQ=255) acTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagcctttggcgagtttggtattgatactgccaacatgttcgagttctgggac < 1:217880‑M1/150‑79 (MQ=255) acTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGTGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTc > 1:395904/1‑150 (MQ=255) aGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACGCtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactggg < 1:216651‑M1/150‑83 (MQ=255) tATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcgg > 1:317229‑M1/1‑61 (MQ=255) cAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgtta > 2:323931‑M1/1‑55 (MQ=255) cAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgtta < 1:366871‑M1/150‑96 (MQ=255) gCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatgctgccaacatgttcgagttctgggactgggttggcggccgttactct < 1:870232‑M1/150‑100 (MQ=255) gCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactct > 2:593975‑M1/1‑51 (MQ=255) gCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactct > 2:964005‑M1/1‑51 (MQ=255) aTAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgt > 2:558284‑M1/1‑47 (MQ=255) gcgcgTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggt > 1:256862‑M1/1‑42 (MQ=255) tCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgt > 1:383856‑M1/1‑29 (MQ=255) cTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtc < 2:765772‑M1/149‑123 (MQ=255) cTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCg < 1:892388/150‑1 (MQ=255) aaaGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgatt < 2:936304‑M1/150‑127 (MQ=255) aaaGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgatt > 1:24397‑M1/1‑24 (MQ=255) aaaGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcga < 1:9946‑M1/148‑125 (MQ=255) aaaGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGTGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGAtt < 2:395904/150‑1 (MQ=255) cGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttc < 2:248026‑M1/150‑131 (MQ=255) gCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctc > 1:396232‑M1/1‑18 (MQ=255) gCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctc > 2:971073‑M1/1‑18 (MQ=255) ggTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctc > 2:977784‑M1/1‑15 (MQ=255) tgatgaAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccat > 1:101349‑M1/1‑13 (MQ=255) gatgaAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGATTGGCCTGTCGAtt > 2:909056/1‑150 (MQ=255) atgaAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcg > 2:726697‑M1/1‑11 (MQ=255) atgaAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcg > 2:371592‑M1/1‑11 (MQ=255) atgaAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcg > 2:893180‑M1/1‑11 (MQ=255) gaAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcggc > 1:298404‑M1/1‑9 (MQ=255) gaAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcggc > 2:736560‑M1/1‑9 (MQ=255) aaaaaCACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcggct > 2:288068‑M1/1‑8 (MQ=255) aaaaaCACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcggct > 1:857925‑M1/1‑8 (MQ=255) acactttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcggctttga < 1:85084‑M1/150‑147 (MQ=255) cacGTTGCAAAACACTTTGTGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGATTGGCCTGTCGATTGTtctctc > 1:593192/1‑149 (MQ=255) | GGACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGATTGGCCTGTCGATTGTTCTCTC > CP009273/4224242‑4224536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |