| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360180 = | 50 (0.830) | 39 (1.180) +CCCTAGACCTAGGGCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACG |
33/152 | NT | 73.9% | intergenic (‑114/+481) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 1308956 = | 0 (0.000) | intergenic (+41/+19) | ompW/yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein | |||||
GGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAATATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGTTGGAATT > CP009273/1308810‑1309104 | cgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGa > 1:2929‑M2/147‑149 (MQ=255) gggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATgg < 1:1029002‑M2/8‑1 (MQ=255) aggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATgg < 1:872764‑M2/8‑1 (MQ=255) ggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATgg > 1:310361‑M2/142‑149 (MQ=255) ggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGt < 1:1017727‑M2/9‑1 (MQ=255) gtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAg > 1:551893‑M2/136‑150 (MQ=255) gaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGt < 2:480979‑M2/18‑1 (MQ=255) aaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGta > 1:57030‑M2/132‑150 (MQ=255) aaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagcaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGta > 2:833050‑M2/132‑150 (MQ=255) aagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGtat < 2:311370‑M2/20‑1 (MQ=255) agactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGtat > 2:63278‑M2/130‑149 (MQ=255) agactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGtat > 2:536818‑M2/130‑149 (MQ=255) ggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATttc < 2:838298‑M2/26‑1 (MQ=255) tcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATttctt < 1:554956‑M2/28‑1 (MQ=255) cctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATttcttc < 2:290121‑M2/29‑1 (MQ=255) ctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCg > 2:302551‑M2/121‑150 (MQ=255) ctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCg < 2:549721‑M2/30‑1 (MQ=255) ctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCg < 2:969769‑M2/30‑1 (MQ=255) tttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggcaatacgGGACATGGCATAAAGGGCATTATTTCTTCGc > 1:712370‑M2/120‑150 (MQ=255) cgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCtt < 1:300795‑M2/33‑1 (MQ=255) ttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTa > 1:666952‑M2/115‑150 (MQ=255) ttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTa < 1:998260‑M2/36‑1 (MQ=255) ttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTAc < 1:485463‑M2/37‑1 (MQ=255) tatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACg < 1:161829‑M2/38‑1 (MQ=255) ttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAg > 2:208311‑M2/106‑150 (MQ=255) tcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCaga < 2:851628‑M2/52‑1 (MQ=255) tcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCa > 1:871259‑M2/99‑148 (MQ=255) ggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGc < 1:263941‑M2/54‑1 (MQ=255) ggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGc < 1:189621‑M2/54‑1 (MQ=255) ggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGc > 1:1025721‑M2/97‑150 (MQ=255) aacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAAt < 2:459962‑M2/58‑1 (MQ=255) gctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaa < 1:595865‑M2/61‑1 (MQ=255) ctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaa > 1:365356‑M2/89‑149 (MQ=255) tctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaaa > 2:239799‑M2/88‑149 (MQ=255) ctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAAttt > 1:783820‑M2/84‑150 (MQ=255) ctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAAttt > 1:574172‑M2/84‑150 (MQ=255) gtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCa < 2:683749‑M2/71‑1 (MQ=255) caaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAgttgtt < 1:215949‑M2/77‑1 (MQ=255) caaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAgttgtt > 1:379380‑M2/74‑150 (MQ=255) aatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTg < 2:2929‑M2/79‑1 (MQ=255) gccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAatat > 1:735398‑M2/64‑150 (MQ=255) ccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATAtt > 1:663134‑M2/63‑150 (MQ=255) gacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGa < 2:310361‑M2/92‑1 (MQ=255) ctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCAt > 1:801405‑M2/42‑150 (MQ=255) gcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCt < 2:735398‑M2/114‑1 (MQ=255) cgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCtt < 1:738017‑M2/115‑1 (MQ=255) cgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCtt > 2:623476‑M2/36‑150 (MQ=255) cggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTcc > 1:817960‑M2/32‑150 (MQ=255) ggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCt > 1:372814‑M2/31‑150 (MQ=255) tcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCAt < 2:190945‑M2/123‑1 (MQ=255) agctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTa < 2:5216‑M2/126‑1 (MQ=255) actcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATc < 2:550772‑M2/131‑1 (MQ=255) cggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATg > 1:453968‑M2/11‑150 (MQ=255) cggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATg > 1:712359‑M2/11‑150 (MQ=255) taatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGtt < 1:253746‑M2/143‑1 (MQ=255) aatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGTTg > 1:34737‑M2/7‑150 (MQ=255) aatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGTTg > 2:920984‑M2/7‑150 (MQ=255) aatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGTTg > 2:999519‑M2/7‑150 (MQ=255) gGGACATGGTATAAAGGGCATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGTTGGAAtt > 1:286672‑M2/2‑150 (MQ=255) | GGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAATATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCGATGGTTGGAATT > CP009273/1308810‑1309104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |