| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,484,009 | T→C | 55.0% | pseudogene (213/252 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,484,009 | 0 | T | C | 55.0% | 24.9 / 138.2 | 100 | pseudogene (213/252 nt) | gapC | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| Reads supporting (aligned to +/- strand): ref base T (17/28); new base C (31/24); total (48/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.07e-07 | |||||||||||
Only 100 of 103 total aligned reads displayed.
CGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATCGGTATA > CP009273/1483862‑1484158 | cggcgCAGATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgtgt < 2:252947/150‑1 (MQ=255)cggcgCAGATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgtgt > 2:971534/1‑150 (MQ=255) ccggaagggcaaaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGa < 2:706125‑M1/46‑1 (MQ=255) cggaagggcaaaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGAc > 2:779744‑M1/104‑150 (MQ=255) cgcAGATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGAc < 2:643193/150‑1 (MQ=255) ggaagggcaaaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGAc < 2:754262‑M1/47‑1 (MQ=255) gaagggcaaaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGa > 2:690917‑M1/102‑150 (MQ=255) aGATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGaa < 2:903816/150‑1 (MQ=255) gATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAg < 1:68016/150‑1 (MQ=255) gggcaaaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGc > 1:825816‑M1/99‑150 (MQ=255) aTGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 2:335448/150‑1 (MQ=255) gTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCa > 2:171914/1‑149 (MQ=255) aaaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCata < 1:718736‑M1/56‑1 (MQ=255) aaaattttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttatatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCatat > 2:550955‑M1/94‑150 (MQ=255) attttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCg < 2:309810‑M1/60‑1 (MQ=255) aTGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGt < 2:467363/150‑1 (MQ=255) ttcttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTa < 1:510054‑M1/63‑1 (MQ=255) ggCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTa > 2:1021855/1‑150 (MQ=255) ttaatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCg < 1:897829‑M1/66‑1 (MQ=255) taatcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCg < 1:624849‑M1/66‑1 (MQ=255) gCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCg < 1:510401/148‑1 (MQ=255) gCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTa > 1:724711/1‑150 (MQ=255) atcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTa > 2:924854‑M1/82‑149 (MQ=255) tcatgacgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTAcc > 1:266525‑M1/81‑150 (MQ=255) acgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGGAGCCATATTCGTTATCGTACCAGGc > 2:940239‑M1/76‑149 (MQ=255) acgcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCg > 1:706125‑M1/76‑150 (MQ=255) tCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGAc > 2:79056/1‑150 (MQ=255) gcagtcctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGAc > 2:324187‑M1/74‑150 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGt > 1:358453/1‑150 (MQ=255) cctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGttt < 1:95097‑M1/82‑1 (MQ=255) gACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGtttt > 1:409962/1‑150 (MQ=255) ctttaacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGtttt > 1:822094‑M1/68‑150 (MQ=255) taacttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCa > 2:502691‑M1/65‑149 (MQ=255) ccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCAc < 1:922440/150‑1 (MQ=255) cttcattttatcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAg > 2:95097‑M1/62‑150 (MQ=255) tggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGtt > 1:986443/1‑150 (MQ=255) gtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTg > 2:402245/1‑149 (MQ=255) tcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATc > 2:501637‑M1/52‑149 (MQ=255) tcaggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATc > 1:834753‑M1/52‑149 (MQ=255) aggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGc > 1:959757‑M1/50‑149 (MQ=255) ggtaaaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGccc > 1:450662‑M1/49‑150 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAc < 1:1031836/150‑1 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAc < 1:300516/150‑1 (MQ=255) aaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCcacag < 1:290364‑M1/106‑3 (MQ=255) aaaaaaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCaca > 1:7070‑M1/45‑148 (MQ=255) aaTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAcgg < 1:401677/147‑1 (MQ=255) aaTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGCGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAcggcgg > 1:398216/1‑150 (MQ=255) aaagagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGt > 2:307042‑M1/41‑150 (MQ=255) agagcgaccgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTaa < 1:366752‑M1/112‑1 (MQ=255) gagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGtt > 2:71814/1‑150 (MQ=255) cgaagtcgctctttttagatcacagtgtcaCGTCAGAGTTTAGCGACTTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGtt > 2:410789‑M1/31‑150 (MQ=255) gCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGc < 1:16391/150‑1 (MQ=255) aGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTgg > 1:77954/1‑150 (MQ=255) aGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTgg > 1:522724/1‑150 (MQ=255) gTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCa < 2:864247/150‑1 (MQ=255) ttttttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCAt < 1:171914/150‑1 (MQ=255) ttttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATc < 2:358453/149‑1 (MQ=255) tttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCAt > 2:841678‑M1/18‑147 (MQ=255) tttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATc > 1:309810‑M1/18‑148 (MQ=255) tttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATc > 1:448962‑M1/18‑148 (MQ=255) tttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCa < 1:659748‑M1/132‑1 (MQ=255) ttagatcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTCTGCGTGGCAtcaca < 2:456928‑M1/134‑3 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCaa < 1:835428/149‑1 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCaa < 2:841258/149‑1 (MQ=255) tcacagtgtcaCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACaccg > 2:510054‑M1/12‑150 (MQ=255) cGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACacc < 2:349441/148‑1 (MQ=255) gCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCTAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACaccgaa > 2:611591/1‑150 (MQ=255) cTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACaccgaacc < 2:870796/150‑1 (MQ=255) aCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAAt > 2:987099‑M1/2‑149 (MQ=255) cgTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATgg > 2:568462/1‑150 (MQ=255) tCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTCGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCt < 1:370946/150‑1 (MQ=255) agagTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGAAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGc > 2:987907/1‑150 (MQ=255) gagTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGcc < 2:500681/150‑1 (MQ=255) gTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCaa < 2:802800/150‑1 (MQ=255) aGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGa < 2:65284/149‑1 (MQ=255) gCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGata < 2:257385/150‑1 (MQ=255) gCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGat < 2:831029/149‑1 (MQ=255) gCGAATTTTTCGAGGGTGCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGat < 1:915594/149‑1 (MQ=255) gAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATc < 1:366372/150‑1 (MQ=255) aaTTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCg > 2:274404/1‑150 (MQ=255) aTTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCgg < 1:402245/150‑1 (MQ=255) tttttCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCgg > 2:49487/1‑149 (MQ=255) tCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGaa > 1:427074/1‑147 (MQ=255) tGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTAttt < 2:724711/150‑1 (MQ=255) gCGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttc > 2:220633/1‑150 (MQ=255) cGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttct < 1:661004/150‑1 (MQ=255) cGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttc < 1:841213/149‑1 (MQ=255) cGAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttc < 2:624849/149‑1 (MQ=255) gAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttctt > 1:61225/1‑150 (MQ=255) gAATAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttctt > 1:173423/1‑150 (MQ=255) aaTAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttcttc < 1:1014536/150‑1 (MQ=255) aaTAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttcttc < 1:890980/150‑1 (MQ=255) aaTAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATttctt > 2:367206/1‑149 (MQ=255) tAAGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCAt > 2:858531/1‑150 (MQ=255) aGCTGTGTGACGAAGCCATATTCGTTATCGTGCCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTAGCATCAAACACCGAAACGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATc < 2:205214/149‑1 (MQ=255) aGCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATc < 2:173423/149‑1 (MQ=255) gCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATCgg > 1:633608/1‑150 (MQ=255) gCTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATCgg < 2:290364/150‑1 (MQ=255) cTGCGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACAGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATCGGt < 2:659748/150‑1 (MQ=255) tgtgACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATCGGtata < 1:71814/150‑1 (MQ=255) | CGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCGTGGCATCAAACACCGAACCGAAATGGCTGCCAATGATATCGGAAGAGACTATTTCTTCATCGGTATA > CP009273/1483862‑1484158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |