| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP009273 | 4,224,391 | Δ12 bp | 100% | coding (706‑717/1650 nt) | pgi → | glucosephosphate isomerase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 4224391 | 4224402 | 12 | 10 [0] | [0] 10 | pgi | glucosephosphate isomerase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4224390 | 0 (0.000) | 8 (0.800) | 8/262 | NT | 100% | coding (705/1650 nt) | pgi | glucosephosphate isomerase |
| ? | CP009273 | 4224403 = | 0 (0.000) | coding (718/1650 nt) | pgi | glucosephosphate isomerase | |||||
GACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGATTGGCCTGTCGATTGTTCTCTCC > CP009273/4224243‑4224537 | gACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtt > 2:40271‑M1/1‑148 (MQ=255) tCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACG‑‑GTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctt < 1:8354‑M1/150‑13 (MQ=255) tGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccacc > 2:194369‑M1/1‑131 (MQ=255) ccACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttg < 1:194369‑M1/150‑44 (MQ=255) ttCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattga < 1:40271‑M1/149‑51 (MQ=255) aGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactg < 2:30735‑M1/148‑81 (MQ=255) cATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtaatgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttg > 2:132382‑M1/1‑48 (MQ=255) cgcgcgTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggt > 1:192428‑M1/1‑43 (MQ=255) aGCGGCAGGTGATGAAAAACACtttgcggcgctttccaccaatgccaaagccgttggcgagtttggtaatgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgt < 1:132382‑M1/150‑129 (MQ=255) actttgcggcgctttccaccaatgccaaagccgttggcgagtttggtattgatactgccaacatgttcgagttctgggactgggttggcggccgttactctttgtggtcagcgattggcctgtcgattgttctctccatcggctttgat > 2:177531‑M1/1‑2 (MQ=255) | GACTCACATCGCGGAAGTGCTGAAAAAAGTAAACCCGGAAACCACGCTGTTCTTGGTAGCATCTAAAACCTTCACCACTCAGGAAACTATGACCAACGCCCATAGCGCGCGTGACTGGTTCCTGAAAGCGGCAGGTGATGAAAAACACGTTGCAAAACACTTTGCGGCGCTTTCCACCAATGCCAAAGCCGTTGGCGAGTTTGGTATTGATACTGCCAACATGTTCGAGTTCTGGGACTGGGTTGGCGGCCGTTACTCTTTGTGGTCAGCGATTGGCCTGTCGATTGTTCTCTCC > CP009273/4224243‑4224537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |