New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 378045	NA (NA)	7 (0.670)	7/274	NT	63.8%	intergenic (+10/+2)	insD1/yaiX	IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase
	?	CP009273	= 750111	4 (0.380)					intergenic (‑187/‑522)	gltA/sdhC	citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556

TGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGTTAATCTTAGGTGAAATACCGACTTCATAACTTTTACGCATTATATGCTTTTCCTGGTAATGTT  >  CP009273/749974‑750260                                                                                                                                          |                                                                                                                                                      tGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTACTTAGCAATcc                                                                                                                                           >  1:188459/1‑150 (MQ=255)                                      tcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCg                                                                                                      <  1:11327‑M2/56‑1 (MQ=255)                                            tCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccg                                                                                                <  2:23453‑M2/150‑56 (MQ=255)                                                      gttAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatgtgttatcacttaacccattacaagcccgctgccg                                                                                          <  2:196099‑M2/146‑62 (MQ=255)                                                          aaGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatatt                                                                                  <  1:34599‑M2/150‑70 (MQ=255)                                                                                gagCTCTGCGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccag                                                            <  2:71264‑M2/150‑92 (MQ=255)                                                                                              agtgatattggttgtctggagattcagggggccagtctATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGATAATCTGAGGGGAAATAcc                                              >  1:45857‑M2/39‑150 (MQ=255)                                                                                                cAGGTAAAGGATGCATTGATGACGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatg                                             >  1:196099‑M2/1‑43 (MQ=255)                                                                                                  ggTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcca                                          <  2:64234‑M2/150‑110 (MQ=255)                                                                                                         gATCCATTGATGACGAATAAATGGCGAATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGTTAATCTTAGGTGAAATACCGACTTCATAAc                                   >  1:17092/1‑150 (MQ=255)                                                                                                                     aCGAATAAATGGCGAATCAAGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac                       >  1:71264‑M2/1‑22 (MQ=255)                                                                                                                         ggggccagtctATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGTTAATCTTAGGTGAAATACCGACTTCATAACTTTTACGCATTATATg                   >  2:188424‑M2/12‑150 (MQ=255)                                                                                                                               ggCGAATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGTTAATCTTAGGTGAAATACCGACTTCATAACTTTTACGCATTATATGc                  >  1:86974/1‑145 (MQ=255)                                                                                                                                gCGAATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGTTAATCTTAGGTGAAATACCGACTTCATAACTTTTACGCATTATATGCt                 <  2:86974/145‑1 (MQ=255)                                                                                                                                          tggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgct  <  2:113552‑M2/150‑150 (MQ=255)                                                                                                                                          tggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgct  <  2:58594‑M2/150‑150 (MQ=255)                                                                                                                                          tggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgct  <  2:37957‑M2/150‑150 (MQ=255)                                                                                                                                          tggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgct  <  2:148929‑M2/150‑150 (MQ=255)                                                                                                                                          tggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgct  <  1:147291‑M2/150‑150 (MQ=255)                                                                                                                                          tggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggacgccatttgttataatgctagaacgcccctgcaaggttttttgcg  <  2:102828‑M2/150‑150 (MQ=255)                                                                                                                                          |                                                                                                                                                      TGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGATCCATTGATGACGAATAAATGGCGAATCAAGTACTTAGCAATCCGAATTATTAAACTTGTCTACCACTAATAACTGTCCCGAATGAATTGGTCAATACTTCCACACTGTTACATAAGTTAATCTTAGGTGAAATACCGACTTCATAACTTTTACGCATTATATGCTTTTCCTGGTAATGTT  >  CP009273/749974‑750260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.