| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3180785 | NA (NA) | 12 (1.140) | 12/276 | NT | 100% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3426717 = | 0 (0.000) | coding (203/1125 nt) | smf | DNA recombination‑mediator A family protein | |||||
CGACTCCCCACTACGGCAAGCTGAAATGAATGCAGCGCGTGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCAT > CP009273/3426573‑3426864 | cGACTCCCCACTACGGCAAGCTGAAATGAATGCAGCGCGTGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCACCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTccaa > 2:61480/1‑149 (MQ=255) cccACTACGGCAAGCTGAAATGAATGCAGCGCGTGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagac > 1:129119‑M2/1‑143 (MQ=255) gcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACcaaca < 2:165719‑M2/11‑1 (MQ=255) cagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACCAACAAAg < 2:65604‑M2/14‑1 (MQ=255) gcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATa < 1:173604‑M2/27‑1 (MQ=255) atgCAGCGCGTGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaac < 1:183649‑M2/149‑30 (MQ=255) cgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGt > 1:69075‑M2/115‑150 (MQ=255) cgcgTGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatc > 1:163339‑M2/1‑114 (MQ=255) tGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcactt > 1:18900‑M2/1‑110 (MQ=255) gcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATgaaaga < 1:189303‑M2/48‑1 (MQ=255) cTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtga > 1:88709‑M2/1‑100 (MQ=255) gttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatacaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAATGCAAGCGTTGtgcctg > 1:62671‑M2/89‑150 (MQ=255) aacaGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctta > 1:113828‑M2/1‑92 (MQ=255) gccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATg < 2:1333‑M2/70‑1 (MQ=255) gtcaCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt > 1:61480‑M2/1‑68 (MQ=255) ggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAAcc < 1:39459‑M2/96‑1 (MQ=255) gTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa < 2:162815‑M2/146‑89 (MQ=255) acagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTg < 2:4277‑M2/118‑1 (MQ=255) acagatgtctggaaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGc > 2:150364‑M2/32‑150 (MQ=255) cAGGAATTAAATGATGGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaac < 1:41435‑M2/150‑120 (MQ=255) aaatataggggcaaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGc > 2:121667‑M2/20‑150 (MQ=255) tgatgGTTGGGTTGCTCCAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcg < 1:133546‑M2/149‑130 (MQ=255) caaatccaTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCa > 1:173168‑M2/9‑150 (MQ=255) caTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATatcat > 2:128713‑M2/3‑150 (MQ=255) | CGACTCCCCACTACGGCAAGCTGAAATGAATGCAGCGCGTGCAGTTCTCCTTCAACAAACAGTGCGCCGGGGTAATCTGTCGTCGCCAGAAGTTGAGGAGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCAT > CP009273/3426573‑3426864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |