| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BA000036 | 2266645 = | 79 (0.850) | 4 (0.040) | 3/590 | 15.1 | 4.9% | intergenic (+247/+250) | Cgl2143/Cgl2144 | L‑asparaginase/archaeal Glu‑tRNAGln amidotransferase subunit D/Nucleotidyltransferase/DNA polymerase involved in DNA repair |
| ? | BA000036 | 2346282 = | NA (NA) | intergenic (+231/+5) | Cgl2211/Cgl2212 | Predicted permease/Transposase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATTGGGCTGACTGGTTTGCTGAAAATGGTGAAACGGGGGATGACGAATAGGGTTTCATCGGGTTTCGGGGTGCTTTTGGGCGGTGGTTGCCCATGAATAGACGCAAAGGGAAAGAATGTTCTAATATTCACCACAAATTGCTGCCGAAAGGTGGCAGTTTGTGGTGGATCCTTGCCATAGAACCTCGGCAAACATTCAGAAATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCCAATTCTGATCGAAAATTTGCGCTAATTCGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BA000036/2266945‑2266645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGACACTTGGTCACCACGCTAAACCGCGCATGCTCTGCCATCTCCACACCCTGATCCCACGTCAA > BA000036/2346282‑2346577 GATTGGGCTGACTGGTTTGCTGAAAATGGTGAAACGGGGGATGACGAATAGGGTTTCATCGGGTTTCGGGGTGCTTTTGGGCGGTGGTTGCCCATGAATAGACGCAAAGGGAAAGAATGTTCTAATATTCACCACAAATTGCTGCCGAAAGGTGGCAGTTTGTGGTGGATCCTTGCCATAGAACCTCGGCAAACATTCAGAAATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCAAATTCTGATCGAAAATTTGCGCTAATTCGAGGG > 2:267303/1‑300 ATTGGGCTGACTGGTTTGCTGAAAATGGTGAAACGGGGGATGACGAATAGGGTTTCATCGGGTTTCGGGGTGCTTTTGGGCGGTGGTTGCCCATGAATAGACGCAAAGGGAAAGAATGTTCTAATATTCACCACAAATTGCTGCCGAAAGGTGGCAGTTTGTGGTGGATCCTTGCCATAGAACCTCGGCAAACATTCAGAAATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCCAATTCTGATCGAAAATTTGCGCTAATTCGAGGGG > 1:16442/1‑300 GGGTGCTTTTGGGCGGTGGTTGCCCATGAATAGACGCAAAGGGAAAGAATGTTCTAATATTCACCACAAATTGCTGCCGAAAGGTGGCAGTTTGTGGTGGATCCTTGCCATAGAACCTCGGCAAACATTCAGAAATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCCAATTCTGATCGAAAATTTGCGCTAATTCGAGGGGCGAATTCAATCGGTGGATGCACCAACTACGATGTTTTCATATACCTGCGTCGCGCTTTTAAAACCAT < 1:25108/300‑1 AAGAATGTTCTAATATTCACCACAAATTGCTGCCGAAAGGTGGCAGTTTGTGGTGGATCCTTGCCATAGAACCTCGGCAAACATTCAGAAATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCCAATTCTGATCGAAAATTTGCGCTAATTCGA‑GGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCTCTTTTAAAACCATGCATTTTCCGCTGCCGGTTATTCAGCAACTCCTGTGCCCGCTGAA > 2:238037/1‑300 ATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCCAATTCTGATCGAAAATTTGCGCTAATTCGAGGGGCGAATTCAATCGGTGGATGCACCAACTACGATTCTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGAAGATCCTGTGCCCGCTGAACTCCTTCGTCACTTACTTTCGCAAAATTAGTGCCCTTCGGGCAAAAATCCCTGACTAATCCTTTCGTCTTCTCATTCCACCCACGCTGC > 2:355899/1‑300 GGGCGAATTCAATCGGTGGATGCACCAACTACGTTTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGACACTTGGTCACCACGCTAAACCGCGCATGCTCTGCCATCTCCACACCCTGATCCCACGTCAA < 2:233280/299‑1 GATTGGGCTGACTGGTTTGCTGAAAATGGTGAAACGGGGGATGACGAATAGGGTTTCATCGGGTTTCGGGGTGCTTTTGGGCGGTGGTTGCCCATGAATAGACGCAAAGGGAAAGAATGTTCTAATATTCACCACAAATTGCTGCCGAAAGGTGGCAGTTTGTGGTGGATCCTTGCCATAGAACCTCGGCAAACATTCAGAAATCCCCGTTGGGCCCTAAGGGGAGGTGGGTTGCAAAAATCCGTCCTCAGTCCGGCGTGAGAGGCCAATTCTGATCGAAAATTTGCGCTAATTCGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BA000036/2266945‑2266645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGACACTTGGTCACCACGCTAAACCGCGCATGCTCTGCCATCTCCACACCCTGATCCCACGTCAA > BA000036/2346282‑2346577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |