New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	1693901 =	0 (0.000)	3 (0.040) +TAATGTTTAATTTAAATGATGGGTTGCGAGCACTCGCGCAGTAAATG	3/500	13.5	7.5%	coding (18/660 nt)	Cgl1598	Pentose‑5‑phosphate‑3‑epimerase
	?	BA000036	2509508 =	88 (0.950)					coding (586/612 nt)	Cgl2366	Pirin‑related protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTTCATGCCAGGCATGACCGATACCGGCGATGAGAAATCAGTGCAGATGTGGCCACACCGCCACGGCACCGATGCGATGTTTGTGGCAGTGCTGCGAAAGAAGTAGACCTGTGAGCTAAGTGGGGTAGACAAGAGGGCTATGATTTAGGGCATGGCACAACGTACTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BA000036/1694070‑1693901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGCAA  >  BA000036/2509508‑2509619                                                                                                                                                                           |||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                 gcttaATGACAGGCAGGACCGATACCGGCGATGAGAAATCAGTGCAGAGGTGGCCACACCGCCACGGCACCGATGCGAGGTTTGTGGCAGTGCTGCGAAAGAAGTAGACCTGTGAGCTAAGTGGGGTAGACAAGAGGGCTATGATTTAGGGCATGGCACAACGTACTCCATAATGTTTAATTTAAATGATGGGTTGCGAGCACTCGCGCAGTAAATGGGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAA                               <  2:529868/295‑1                            gctATGAGAACTAAGTGAAGATGTGGCCGCAGCGCCGCGGCACCGATGGGATGTTTGTGGGAGTGCTGCGAAAGAAGTAGACCTGTGAGCTAAGTGGGGTAGACAAGAGGGCTATGATTTAGGGCATGGCACAACGTACTCCATAATGTTTAATTTAAATGATGGGTTGCGAGCACGCGCGCAGTAAATGGGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGC    <  2:82317/297‑1                              gagGAGAAATCAGGGCAGAGGTGGCCACACCGCCAAGGCACCGATGGGATGTTTGTGGCAGGGCTGCGAAAGAAGTAGACCTGTGAGCTAAGTGGGGTAGACAAGAGGGCTATGATTTAGGGCATGGCACAACGTACTCCATAATGTTTAATTTAAATGATGGGTTGCGAGCACTCGCGCAGTAAATGGGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGCAA  <  2:172625/297‑1                                                                                                                                                                           |||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                 AGTTCATGCCAGGCATGACCGATACCGGCGATGAGAAATCAGTGCAGATGTGGCCACACCGCCACGGCACCGATGCGATGTTTGTGGCAGTGCTGCGAAAGAAGTAGACCTGTGAGCTAAGTGGGGTAGACAAGAGGGCTATGATTTAGGGCATGGCACAACGTACTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BA000036/1694070‑1693901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGCAA  >  BA000036/2509508‑2509619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.