Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349433,394,3670CG24.3% 368.0 / 19.7 157G178A (GGA→GCA) ppaXpyrophosphatase PpaX
Reads supporting (aligned to +/- strand):  ref base C (23/89);  new base G (36/0);  total (68/89)
Fisher's exact test for biased strand distribution p-value = 4.14e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 158 total aligned reads displayed.

ACGATCTGTTTTTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCAAGGGTA  >  NZ_CP034943/3394228‑3394504
                                                                                                                                           |                                                                                                                                         
           ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                                <  1:1559494/140‑1 (MQ=255)
           ttCTCACAGATTACGTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                                <  2:358077/140‑1 (MQ=255)
            tctcACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTcc                                                                                                                               >  2:1551947/1‑140 (MQ=255)
            tctcACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATAAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGtttttgc                                                                                                                               >  2:1668470/1‑138 (MQ=255)
               cacaGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTg                                                                                                                            <  1:785639/140‑1 (MQ=255)
                     ttACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGca                                                                                                                      <  1:809207/140‑1 (MQ=255)
                       aCTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGcaca                                                                                                                    <  2:1869975/140‑1 (MQ=255)
                       aCTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGcaca                                                                                                                    <  2:1011341/140‑1 (MQ=255)
                        cTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACAt                                                                                                                   <  1:1079589/140‑1 (MQ=255)
                            aCTCCCACGATTTGTAATAGATCACTCATTTTCTCAAGCATATACTCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTg                                                                                                               <  2:1867069/140‑1 (MQ=255)
                            aCTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATACTCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTg                                                                                                               <  1:1896415/140‑1 (MQ=255)
                              tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCCGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTCCGGCGTTTTTACCGGCCCGCACATCGTGGt                                                                                                             >  2:1587144/1‑140 (MQ=255)
                              tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTCCCTGCCAGCACATAGTGGt                                                                                                             >  2:1719571/1‑140 (MQ=255)
                              tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCCGCGTTTTTTCGAGCCAGCACAGCGTGGt                                                                                                             >  1:1646795/1‑140 (MQ=255)
                              tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCg                                                                                                                                         <  2:479820/112‑1 (MQ=255)
                              tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTCCg                                                                                                                                         >  1:479820/1‑112 (MQ=255)
                              tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTACGGGGTTTTTCCCTGCCAGCACAGCGTGGt                                                                                                             >  2:32179/1‑140 (MQ=255)
                                cAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTACCTGCCACCACAAAGTGGTaa                                                                                                           >  2:138260/1‑140 (MQ=255)
                                 aaCGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCACATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAAt                                                                                                          <  2:481652/140‑1 (MQ=255)
                                  aCGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGCGTTTTTGACTGCCACCCCAACGTGGTAAtt                                                                                                         >  1:1638487/1‑140 (MQ=255)
                                   cGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTGCCTGCCAGCAAAACGTGGTAATTa                                                                                                        >  1:1473832/1‑140 (MQ=255)
                                         gTAATAGCTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCg                                                                                                  <  1:1855331/140‑1 (MQ=255)
                                           aaTAGATCACTCATTTTCTCAATCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGAc                                                                                                <  1:531457/140‑1 (MQ=255)
                                           aaTAGATCACTCATTTTCTCAAGCATATAATCCGGCTCATGCTTTTCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGAc                                                                                                <  1:969532/140‑1 (MQ=255)
                                           aaTAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGAc                                                                                                <  1:595263/140‑1 (MQ=255)
                                               gATCACTCATTTTCTCACGCATAGAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCaga                                                                                            <  1:1080697/140‑3 (MQ=255)
                                               gATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATa                                                                                            <  1:938066/140‑1 (MQ=255)
                                                  cACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTCCCTGCCAGCACATCGTGGTAAATATAGACGACCATAATg                                                                                         >  2:1215314/1‑140 (MQ=255)
                                                    cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGAGGCGTTTTTAGCTGCCCGCACAGCGTGGTAAGTATCTACCACCaaaagtgc                                                                                       >  1:1700627/1‑136 (MQ=255)
                                                    cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTGCCAGCCAGCACAACGGGGTAATTATATCCGACCCAAATGGc                                                                                       >  1:1353333/1‑140 (MQ=255)
                                                    cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGGTGTTGTTGGGGGGTTTTTAGCTTCCGGCCCATCGTGGGAATTATGTGCCACGCTAATggg                                                                                       >  1:1200551/1‑139 (MQ=255)
                                                         tttCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTACGGGGTTTTTACCTGCCACCACATCGTGGTAATTATCTACGACCATAATGGCGTccg                                                                                  >  2:950008/1‑140 (MQ=255)
                                                               aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTCCCTGCCAGCACAACGTGGTCAATATCTCCGGCCATAATTGCTTCCGCCGGCt                                                                            >  2:745123/1‑140 (MQ=255)
                                                               aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCCCAACGGGGTAAATATCTCCGACCAAAAAGGCTTCCCCCGGca                                                                            >  2:900123/1‑139 (MQ=255)
                                                               aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCt                                                                            <  1:973011/140‑1 (MQ=255)
                                                               aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCt                                                                            <  1:1743717/140‑1 (MQ=255)
                                                               aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGTTTTTCCCAGCCCGCACCTCGTGGTAATTATCTCCGACCCTAATTGCTTCCGCCGGcg                                                                            >  1:1476585/1‑139 (MQ=255)
                                                                     ataATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTc                                                                      <  1:158451/140‑1 (MQ=255)
                                                                     ataATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTc                                                                      <  2:1129205/140‑1 (MQ=255)
                                                                       aaTCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCt                                                                    <  2:1917673/140‑1 (MQ=255)
                                                                       aaTCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCt                                                                    <  2:1917841/140‑1 (MQ=255)
                                                                          cAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGc                                                                 <  1:664831/140‑1 (MQ=255)
                                                                           aGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCt                                                                            <  1:1891065/128‑1 (MQ=255)
                                                                             gcgcATGCTTTGCCAGTGTTTCCGGCCCTGTAATCGTCCATGCGACTCCGGCCGTGTTTGTTCCGGCGTGTTTACCGGCCAGCACAGCGTGGGAAATATAGACCCCCAAAATGGCTTCCGCCGGCGCGCGTCCAACCTGt                                                              >  2:508281/4‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTGCCTGCCAGCACCGCGTGGTAATTATCTCCGACCCAAATTGCGTGCGCCGGCGCGCGTGCGAGCTGt                                                              >  1:827999/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTCCGGCGTTTTTCCCAGCCACCACATCGTGGTAATTATATCCGACCAAAATGGCTTACCCCGGCTCGCGTGCTAGCTGt                                                              >  2:664831/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTGCCTGCCAGCACATCGTGGTCATTATCTCCGACCATAATGGGTTGCGCCGGCTCGCTTCCTAGCTGt                                                              >  2:765105/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACAACGTGGTACTTATATCCGACCCAAATTGCTTCCGCCGGCTCGCGTCCTAGCTGt                                                              >  2:1498503/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACAACGTGGGACTTATGTCCGAACAAAATGTCTTCCCCCGGCTCGCATCCTAGCTGt                                                              >  2:574199/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGGTTTTCCCGGCCAGCACCTCGGGGTAATTATCACCGACCATAATGGCGTACGCCGGCTCGCGTCCTAGCTGt                                                              >  2:366966/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTAAGGCGTTTTTGCCTGCCAGCCCATCGGGGTAATGATCTCCGACCATAATTGGGGCCGCCGGCGCGCTGCCTATCTGt                                                              >  1:1207226/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTTCGGCGTTTTTACCTGGCACCACAACGTGGTAAATATATACGACCAAAAATGCTTACGCCGGCTCGCGTCCTAGCGGt                                                              >  1:1920977/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGCGGTTTTGCCTGCCAGCACAAAGTGGTAATTATATCCGACCAAAAATGGGTCCGCCCGCGCGCGTCCTAGCGGt                                                              >  1:1417666/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGTTTTTTCCAGCCAGCACAACGGGGGAAATATATCCGACCAAAAAGGGTTACGCCGGCTCGCTTCCTAGCTGt                                                              >  1:466001/1‑140 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGGTTTTGCCGGCCCCCACAACCGGGTAATTATGGCCGCCCAAAAAGGGTTGCGCCCGGGCGCGTCCTatcggg                                                              >  1:1947458/1‑135 (MQ=255)
                                                                             gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTCCGGCGTTTTTGACTGCCAGCACCTCGTGGTAAATATCTCCGAACATAAAGGCGTCCGCCCGCTAGCTTccaacaggt                                                              >  2:1158904/1‑133 (MQ=255)
                                                                                     tttGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACGGCGTTTTTCCCGGCCAGCACAGAGTGGTAAATATCTGCCAACAAAATTGCATACCCCGGGTCGCGTACTTTCTGTTTAAgcgc                                                      >  2:137292/1‑140 (MQ=255)
                                                                                     tttGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTGCCTGCCAGCACATCGTTGTAATTATATCCGACCATAATTGCTTCCGCCGGCTCGGTTCCTAGGTGTTTCAgcgc                                                      >  2:137304/1‑140 (MQ=255)
                                                                                       tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTACCTGCCACCACATCGTTGTAATTATCTCCGACCATAAAGGCTTACCCCGGCTCGCTTCCTAGCTGTTTCAGCGCTa                                                    >  2:1302270/1‑140 (MQ=255)
                                                                                        gCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTag                                                   <  1:1334823/140‑2 (MQ=255)
                                                                                        gCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTaa                                                   <  1:900123/140‑1 (MQ=255)
                                                                                          cAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTaaca                                                 <  2:20766/140‑3 (MQ=255)
                                                                                             tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                              <  2:326197/140‑1 (MQ=255)
                                                                                             tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                              <  1:715543/140‑1 (MQ=255)
                                                                                              gtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGcac                                             <  1:687557/140‑1 (MQ=255)
                                                                                               tttCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTCCCTGGCAGCACAAAGTGGTAATTATATACGACCATAATGGCTTCCCCCGGCTCGCTTACTATCTGTTTCAGCGCTAAAAGcaca                                            >  2:236223/1‑140 (MQ=255)
                                                                                               tttCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGCCGTTTTTGCCTGCCAGCACCTAGTTGTAATTATATACGAACAAAATTGGTTACGCCGGCTCGCATACGAGCTGTTTCAGCGCTAAAAGcaca                                            >  2:59922/1‑140 (MQ=255)
                                                                                                   cGGCCCTTTACTCGTCCCTGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                        <  1:1804099/140‑1 (MQ=255)
                                                                                                   cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                        <  2:506808/140‑1 (MQ=255)
                                                                                                   cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                        <  1:1721331/140‑1 (MQ=255)
                                                                                                   cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                        <  1:84059/140‑1 (MQ=255)
                                                                                                   cGGCCCTGTACTCGTCCATGAGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGACAGCCCATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                        <  2:1143275/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTCCCTGCCAGCACCTCGTGGTAATTATCTCCGACCATAATGGCTTGCGCCGGCTCGCTTCCTAGCTGTTTCCGCGCTAAAAGCCCAGGCGCGGGAt                                  >  2:1782932/1‑140 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  2:1657439/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  2:1438721/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  1:1243/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  2:33252/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  2:1646795/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  2:1635077/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                  <  2:8336/140‑1 (MQ=255)
                                                                                                         tttAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGTTTTTGCCTGCCCGCACATCGTGGTAATTATATCCGACCATAATTGCTTCCGCCGGCGCGCGTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCgggcg                                  >  2:1569071/1‑138 (MQ=255)
                                                                                                               cGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCt                            <  1:137292/140‑1 (MQ=255)
                                                                                                                  ccATGCGACTCCGGCCGTGTTTTTTCCGGCGTTTTTGCCTGCCAGCACAACGGGGTAATTATCTCCGACCCTAATGGCGTGCGCCGGCTCGCTTCCGAGCGGTTTCAGCGCTAAAAGCACAGGCGCGGGCTCAGGCgttt                         >  2:268867/1‑139 (MQ=255)
                                                                                                                   cctGCGACTCCGGCCGTTTTTGGTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGc                        <  1:1379098/138‑1 (MQ=255)
                                                                                                                   cATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGc                        <  1:1378244/140‑1 (MQ=255)
                                                                                                                     tGCGACTCCGGCCGTGTTTGTTCCGGCGTTTTTCCCAGCCACCACCTCGTGGTAATTATCTCCGACCCAAATGGCGGCCCCCGGCGCGCGTCCTAGCGGTTTCAGCGCGAAAAGCCCAGGCTCGGGCTCCGGCGTTGCCa                      >  2:1587536/1‑140 (MQ=255)
                                                                                                                         aCTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGt                  <  2:164690/140‑1 (MQ=255)
                                                                                                                         aCTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGt                  <  2:1200551/140‑1 (MQ=255)
                                                                                                                          cTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTc                 <  1:138260/140‑1 (MQ=255)
                                                                                                                            ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac               <  1:1376/140‑1 (MQ=255)
                                                                                                                            ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac               <  2:185040/140‑1 (MQ=255)
                                                                                                                            ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac               <  1:1668470/140‑1 (MQ=255)
                                                                                                                            ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac               <  1:1551947/140‑1 (MQ=255)
                                                                                                                            ccGGCCGTTTGTGTTCCGGCGTTTGTCCCTGCCAGCACATCGGGGTAATGATCTCCGACCATACTGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac               <  2:1153639/140‑1 (MQ=255)
                                                                                                                             cGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcaca              <  1:32179/140‑1 (MQ=255)
                                                                                                                             cGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcaca              <  2:1315802/140‑1 (MQ=255)
                                                                                                                             cGGCCGTTTTTGTTCCGGAGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGATTCATAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGGTTTGCCATCGTcaca              <  2:1211874/140‑1 (MQ=255)
                                                                                                                                   tttttGTTCCGGGGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca        <  1:1853908/140‑1 (MQ=255)
                                                                                                                                   tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca        <  1:1284462/140‑1 (MQ=255)
                                                                                                                                   tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca        <  1:765105/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                         
ACGATCTGTTTTTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCAAGGGTA  >  NZ_CP034943/3394228‑3394504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑