| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 828,787 | G→A | 100% | E77K (GAA→AAA) | treC → | alpha,alpha‑phosphotrehalase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 828,787 | 0 | G | A | 99.4% | 1153.2 / ‑3.0 | 314 | E77K (GAA→AAA) | treC | alpha,alpha‑phosphotrehalase |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (133/179); total (133/181) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 316 total aligned reads displayed.
GCGATCTGAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTGAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCGATTTCGTCTAAAGA > NZ_CP034943/828650‑828923 | gCGATCTGAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTaaa > 1:4633172/1‑140 (MQ=255) gATCTGAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATa < 1:1615990/140‑1 (MQ=255) cTGAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACgg > 2:2057584/1‑140 (MQ=255) cTGAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACgg > 2:1612316/1‑140 (MQ=255) gaaggtcATTATTGAAAAGCTTGATTACTTAAAACCACTTCAGGTAGATGTGCTTTGGCTGACAGCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGa < 1:3906687/134‑1 (MQ=255) gAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGa < 1:4430862/140‑1 (MQ=255) gAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGa < 1:1581585/140‑1 (MQ=255) cATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgg > 2:2342375/1‑140 (MQ=255) cATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgg < 1:4075231/140‑1 (MQ=255) cATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgg > 2:3354954/1‑140 (MQ=255) cATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgg < 1:3060145/140‑1 (MQ=255) cATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgg > 2:1982599/1‑140 (MQ=255) aatgattGAAAAGCTTTATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGCTTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgg < 2:4858143/136‑1 (MQ=255) attattGAAAATCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAACTACGGGACGATgga < 2:2035080/140‑1 (MQ=255) attattGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATgga < 2:3046019/140‑1 (MQ=255) tattGAAAAGCTTGATTACTTAAAAACCCGTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATggagg < 1:2878828/140‑1 (MQ=255) aaGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGa > 1:2014815/1‑140 (MQ=255) aaGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGa > 1:3577758/1‑140 (MQ=255) aaGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGa > 2:3545155/1‑140 (MQ=255) aGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAg < 1:3464742/140‑1 (MQ=255) aGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAg < 2:690968/140‑1 (MQ=255) tGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGt > 2:1244541/1‑140 (MQ=255) tGATTACTTAAAAACACTTCAGGTAGATGTGCCTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGt > 1:1933215/1‑140 (MQ=255) gATTACTTAAAAACGCTACAGGTGGATGTGCTTTGGCTGACGCCGATTTATGATTCTCCCCAGCATGATAATGGGTACGATATTCGTGATTATTACTCGATTTATCCTGAATACGGAACGATGGAGGATTTTGAGCggct < 2:2782066/140‑3 (MQ=255) gATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGtt < 2:4049513/140‑1 (MQ=255) atgacatAAAAACACTTCAGGTAGATGTGCGTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTa < 2:2788341/134‑1 (MQ=255) aTTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTa < 1:2157890/140‑1 (MQ=255) aTTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTa < 1:4283379/140‑1 (MQ=255) aTTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTa < 1:626774/140‑1 (MQ=255) aaaaaCACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCGGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCg < 1:1982599/140‑1 (MQ=255) aaaaaCACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCg < 1:2746920/140‑1 (MQ=255) aaCACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAg < 2:4749148/140‑1 (MQ=255) cTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCa < 1:3329121/140‑1 (MQ=255) ttCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCAt > 2:2135132/1‑140 (MQ=255) ggTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATaaaa < 2:3187901/140‑1 (MQ=255) tAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAaga < 2:3408854/140‑1 (MQ=255) gATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAgg > 2:4329385/1‑140 (MQ=255) tgtgCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGATGcc > 2:4809241/1‑140 (MQ=255) tgtgCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGcc > 2:4535038/1‑140 (MQ=255) cTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGaa > 2:3580081/1‑140 (MQ=255) tGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAgt < 1:4514344/140‑1 (MQ=255) tGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAgt < 1:2342375/140‑1 (MQ=255) cTGACACCGATTGATGATTCTCCGCAGCCTGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAACTACGGGACGATGGAGGATTTTGAGCGGGTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAgtcgt < 2:1633619/140‑1 (MQ=255) cTGACACCGAGTTCTGATGCTCCGCAGCATGATAATGGGTAGGACATTCGTGATTATGCCTCGATTTATCCTAAATCCGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAATAGAGGCCTGAAAgtcgt < 2:4090397/140‑1 (MQ=255) acacCGATTTATGATTCTCCGCAGCATGATAAGGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCAt < 2:2901575/140‑1 (MQ=255) gATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAACTACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATc < 2:2729483/140‑1 (MQ=255) gATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATc < 2:346714/140‑1 (MQ=255) aTTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGAGTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCt > 1:334626/1‑140 (MQ=255) aTGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtc < 1:4929784/140‑1 (MQ=255) aTGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtc < 1:3367786/140‑1 (MQ=255) aTGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtc < 1:2502500/140‑1 (MQ=255) gATTCTCCGCAGCATGATAATGTGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtcgt < 1:522197/140‑1 (MQ=255) gATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtcgt < 2:2519045/140‑1 (MQ=255) gATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtcgt < 1:2572985/140‑1 (MQ=255) aTTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtcgtc < 1:1000594/140‑1 (MQ=255) ctcCGCATCATGATAATGGGTATGACATTCGTGAGTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAAt < 2:568556/140‑1 (MQ=255) ctcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGATGCTCATAAAAGAGGCCTGAAAGTCGTGATGGATCTTGTCGTCAAt < 2:4830587/140‑1 (MQ=255) ctcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAAt < 2:1091266/140‑1 (MQ=255) ctcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAAt < 1:1244541/140‑1 (MQ=255) cgccGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAAt < 1:4156616/138‑1 (MQ=255) tcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTa < 2:1760442/85‑1 (MQ=255) tcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTa > 1:1760442/1‑85 (MQ=255) tcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGACAGTCGTCATGGATCTTGTCGTCAATc > 2:4577261/1‑140 (MQ=255) tcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAAta > 2:1383646/1‑139 (MQ=255) tcCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATc > 2:4165445/1‑140 (MQ=255) ccGCAGCATGATAATGTGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCa < 2:1518731/140‑1 (MQ=255) ccGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCa < 2:4633172/140‑1 (MQ=255) ccGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCa < 1:1075473/140‑1 (MQ=255) ccGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCa < 1:2057584/140‑1 (MQ=255) ccGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCa < 1:3398706/140‑1 (MQ=255) ccGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCa < 2:1165157/140‑1 (MQ=255) cGCAGCATGATAATGGTTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCAt > 2:2580860/1‑140 (MQ=255) caTGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAg > 2:1279191/1‑109 (MQ=255) tGATACTGGGTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCaa < 2:2251997/140‑1 (MQ=255) aTGGGTATGCGATTCGTGATTATGACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACagag < 1:2803182/140‑1 (MQ=255) ggTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATGCATCAACAGAGcac > 1:4746954/1‑140 (MQ=255) ggTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGcac > 1:1512054/1‑140 (MQ=255) ggTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGcac > 1:1974064/1‑140 (MQ=255) ggTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGcac > 1:3413006/1‑140 (MQ=255) ggTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGcac > 2:1912994/1‑140 (MQ=255) ggTATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGcac > 1:3165065/1‑140 (MQ=255) tATGACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACaa < 1:97264/140‑1 (MQ=255) gACATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATg > 2:3895783/1‑140 (MQ=255) aCATTCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAAggg > 2:4778938/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGATGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGTTTTc > 1:1814299/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCAt > 1:867634/1‑96 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTgtcgt < 2:4949729/108‑1 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 2:1356494/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 1:2226198/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 1:211044/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 1:1282450/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 1:3815154/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 1:711615/1‑140 (MQ=255) tCGTGATTATTACTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTc > 1:1668343/1‑140 (MQ=255) attaCTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCg > 2:1443994/1‑140 (MQ=255) cTCGATTTATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCGAttt < 1:847263/140‑1 (MQ=255) tttATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCACGAGGCGATTTCGTCt > 2:4443278/1‑140 (MQ=255) tttATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCGATTTCGTCt > 1:1443434/1‑140 (MQ=255) tttATCCTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCGATTTCGTCt > 2:3760231/1‑140 (MQ=255) ccTAAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCGATTTCGTCTAAAGa < 2:840908/140‑1 (MQ=255) | GCGATCTGAACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTAGATGTGCTTTGGCTGACACCGATTTATGATTCTCCGCAGCATGATAATGGGTATGACATTCGTGATTATTACTCGATTTATCCTGAATACGGGACGATGGAGGATTTTGAGCGGTTACTGTCCGAAGCTCATAAAAGAGGCCTGAAAGTCGTCATGGATCTTGTCGTCAATCATACATCAACAGAGCACAAATGGTTTCAAGAGGCGATTTCGTCTAAAGA > NZ_CP034943/828650‑828923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |