| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 112,591 | A→T | 9.2% | intergenic (+269/‑35) | gltX → / → cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 112,591 | 0 | A | T | 9.2% | 1257.8 / 18.4 | 434 | intergenic (+269/‑35) | gltX/cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (93/285); new base T (38/3); total (141/293) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.42e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 436 total aligned reads displayed.
ATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACATG > NZ_CP034943/112454‑112728 | aTTCAAAGGCGGCCGCCGCCGTTACAGTCTGAAGTAGGGAGAGCAGAATTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTATCTGTCATGTTTTCTTGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGaaa < 2:2768944/140‑1 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATaaaaaaaa > 2:2527829/1‑136 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATaga > 1:3431831/1‑140 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACAGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATata > 2:4445932/1‑138 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGATAGCAGTAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATagag < 2:726890/140‑1 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATagag < 2:3431831/140‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTT‑TTGGGTGAAGAGGAAAGAAAATAGAGaa > 1:1793257/1‑140 (MQ=255) ccgccgccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGaa < 2:3697907/140‑1 (MQ=255) ccgccgccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGaa < 2:2027629/140‑1 (MQ=255) agccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGTAGAGGAAAAAAAATAGAGAAGTgg > 1:2119686/2‑140 (MQ=255) gccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCGTTTTTTATTGGGTGTAGAGGAAATAAAATATAGAAGTggg > 1:1428589/1‑140 (MQ=255) gccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGGTTAAGCGTCTCTGTCATGTTTTCCTGCAGAGGCGCGTTTGTTTTTGGGGGAATTGGAAAGAAAAGAGAGCAGTgcg > 1:247174/1‑138 (MQ=255) ccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCTGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTGGGTGAAGAGGAAATCAAATAGAGAAGTgggg < 2:1539999/140‑1 (MQ=255) ccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTgggg < 2:1863623/140‑1 (MQ=255) gTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTgggggg < 1:2911821/140‑1 (MQ=255) tGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAATAGCAAAACAAAAAGAAAATAGGGGGGGACCAagtg > 1:674729/1‑140 (MQ=255) aaGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGGAGAGGAAAAAAAATAGACAAAGGGGGGGACGCCTGGGtt > 1:2043244/1‑140 (MQ=255) aaGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCTTGTGtt > 2:3323208/1‑140 (MQ=255) ggAGAGCAGAAGTCTGCTTTTCAAACCGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTat > 2:1659183/1‑139 (MQ=255) ggAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCCGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATAAAAAAGATAAGTGGGGGGAAGCAGGTGTTTTTTAg > 1:791241/1‑140 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:1704648/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:4133379/140‑1 (MQ=255) agCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCGTTTTTTATTGGGTGAAGACGAAATAAAATAGATAAGTGGGGGGAACCAAGTTTTTTTTAGAAtt > 1:1463142/1‑139 (MQ=255) cAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGTAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGca > 2:1184933/1‑139 (MQ=255) cAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGTCGCTTTTTTTATTGTGTGAAGAGGAAATCAAAAAATGAATTGGGGGGACTCATGTTTTTTTTATaaatga > 1:2446414/1‑136 (MQ=255) cAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATAAAATAGAGAAGTGGGGGGAAGCAAGTGTTTTTTAGAATGCt > 2:4835228/1‑140 (MQ=255) gTCTGCTTTTCAACCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 1:1308162/140‑1 (MQ=255) gTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 1:4939356/140‑1 (MQ=255) gTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTATCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 1:3562586/140‑1 (MQ=255) cTGGTTTTCACACAGAGTGGAACCGCGGGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:2680495/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:2247210/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:1114054/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:2242127/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:2602939/140‑1 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTAGTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaag < 1:557052/140‑1 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCGTTTTTTATTGGGTGTAGAGGTAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAaagaag > 1:4870658/1‑140 (MQ=255) gattttCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:2964702/138‑1 (MQ=255) gCTTTTCAAAGAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGGAGAGGCGCTATTTTTATTGGGTGAAGAGGACATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:398880/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCTCTGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:3209024/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:1406770/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:76504/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:4308369/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:2810041/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:3525677/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:2698778/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:3806809/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:1457813/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTGATTGGGTGAAGAGGAACTCAAATAGAGAAGTGGGGGGACGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:4807234/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGACTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:4695803/140‑1 (MQ=255) aCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCGTGTGTTTTTTAGAATGCTCAAAGAAGACATTGATAc < 1:51649/140‑1 (MQ=255) aCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATAc < 1:1000383/140‑1 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGtt < 2:4758259/140‑1 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGtt < 2:1469245/140‑1 (MQ=255) gAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGTAGATGAAATAAAATATATAAGTTGGGGGAAGCAAGTTTTTTTTTTAATTCTAAAATAAAAAATTTATAAACTGttag > 1:4549309/1‑138 (MQ=255) aCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGAt < 1:4386857/140‑1 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTTTAGATGTAATAAAAAAGATTAGTGGGGGGGAGCCTTTGTTTTTTTTTATTCACAAAAAAGACAATTATTAACGGTTAGATCAAg > 1:2342690/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGTATTGGAAAACAAATATAGACGTGGGGGGGAGCATTTGTTTTTTAGATAGCTCAAATAAGAAATTTATACAGTGTTCGATaaat > 1:2171096/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGaa < 1:4518185/77‑1 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAg > 2:3044878/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAg > 2:241698/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGGGGCGCTTTTTTTATTGGGTGAAGCGGAAATCAAATAGAGAAGGGGGGGGAAGCATGTGTTTTTTATAATGCTCAAAGAAGAAATTGATACAGGGTTCGATAAAGATCCAGCAGCaagaa > 2:4936758/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTTGGTGTATAGGAAATAAAATATAGAAGTGGGGGGAAGCATGTGTTTTTTATAAAGCTCAAATAACACAATGATAAACTGTTAGATAAATATCCAGCACCaaaaa > 1:331202/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTTGGTGGAGAGGACATCAAATAGAGAAGTGGGGGGAACCATGTGTTTTTTTTAATGCTCAAAGAAGAAAATTATAAAGTGTTCGATAAAAATACATCAGCaagaa > 1:2804534/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGTATAGGTAATCAAAAATAGAAGTGGGGGGGAGCATGGGTTTTTTTTTATTCTCAAAGAAGACAATTATTAAATTTTCGATGAAAATACAGCACCaagaa > 1:1803269/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAAAAGGAAATCAAATAGAGAATTGGGGGGAATCAAGTGTTTTTTAGAATTCTAAAATAAGAAATTGTTAAAGTGTTAGAGCAAGATACAGCAGCaagaa > 2:384213/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGTAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAAAGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATACAGCAGCaagaa > 2:2556223/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGGTGATGTAAACAAATATAGTAGTGGGGGGAAGCATGTGTTTTTTTGAATGCTCAAATAATACATTGTTACAGTGTTCGATAAACATCAAGCAGCaagaa > 1:1202718/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAATATGAAATGAAATAGAGAAGTGGGGGGAAGCAGGTGTTTTTTAGACTGCTCAAAGAAGAGATTGATAAAGTGTTCGCTCAAGATCCAGAAGCaataa > 2:3779009/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGTGAAGTGGGGGGAAGCCTGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:4662555/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCAt < 1:401683/76‑1 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATTCTCAAAGAATACATTGATACAGTGTTAGATAAAGATCCAGCAGCaagaa > 2:1812102/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAAAGAATACATTGATAAAGTGTTCGATCAAGATACAGCAGCaaaaa > 2:2058934/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAATAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:4095615/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:2399221/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGGGAAGAGGGAAGCAAAAAGAGGAGTGGGGGGCAGCATGTGTTTTTTATAATGCTCAAAGAAGACATTGATACAGTGTTAGAGAAAGATCCAGCAGCaagaa > 1:735630/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCGTTTTTTTTTGGGGTAAGAGGAAATCAAATACAGAACTGGGGGGAAGCCGGTGTTTTTTATAATTCTCAAATAACACATTGATACAGTGTTAGAAAAAGATACACCAGCaagat > 2:1703424/1‑139 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCGGGGGTTTTTGTGTGACGTGGTAAGAGAATAGAGAAGGGGGGGGAAGGCTGGGTGTTTTAGAATGCTCCAGGTAGTCATTGTTACACTGGGCGGTCGAGAGCCCGCGCCaagaa > 2:2491668/1‑140 (MQ=255) ttttCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGTAATCAAATAGAGAAGGGGGGGGAAGCATGTGTTTTTTATAATTCTCAAAGAAGACATTGATAAAGTGGTAGATCAAGATCCAGCAGCAAGAAGTTAttttt > 2:2001278/1‑139 (MQ=255) ttCATGCAGAGGCGCTTTTTTTATTGGGTGAAGATGAAATCAACTAGACCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:3183852/140‑1 (MQ=255) cAGAGGCGCTTTTTTTATTGGGTGTAGAGGAATTCAAATAGAGACGTGGGGTGATTCATGTGTTTTTTAGAATGCTCATAGAAGACATTGATACAGTGTTCGATCTAGATCCAGCAGCAAGAAGTTATTTTGAAGTTAtt < 1:15239/140‑1 (MQ=255) cAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGAtt < 2:101712/140‑1 (MQ=255) gcgcTTTTTTTATTGGGTGAAGAGGAACTCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAAc < 2:1835051/140‑1 (MQ=255) ttattttATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGCGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTAt < 2:4172806/137‑1 (MQ=255) ttGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGttt < 1:3082101/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:2134230/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:2687513/140‑1 (MQ=255) ggggAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:3751742/137‑1 (MQ=255) ggTGTAGAGGAAATCAAATAGAGCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGAGCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:3696451/140‑1 (MQ=255) ggTGCAGAGGAACTCAAATAGACACGGGGGGGGCACCATGTGTTTTTTAGAATGCTCAACGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:3616500/140‑1 (MQ=255) ggTGAAGATGAAATCAACTAGAGACGGGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:3740991/140‑1 (MQ=255) ggTGAAGAGTAAATCAACTAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:3935777/140‑1 (MQ=255) ggTGAAGAGGAAATCCAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:1077291/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGTCGTCGGGCGAAGCATGTGTTTTTTAGAATGCTAAAAGAAGACATTGATTCAGTGTTCGTTCAAGATCCAGCCGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:1271759/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:3162922/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:235736/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:2980936/140‑1 (MQ=255) ggTGAAGAGGAAATCAAAGCTAGAAGTCGGGGCAAGCATCTGTTTTTTAGAATGCTCAAACAAGACATTGATACACTGTTCGATCAAGATCCAGCAGCAAGAAGTTAATTTGAAGTTATTTTAACTTATTCCGGTTTACa < 2:612120/140‑1 (MQ=255) ggTGAAGAGGAAAGCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:3949910/140‑1 (MQ=255) tGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACATg < 2:4486560/140‑1 (MQ=255) gAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCcag > 2:51276/1‑91 (MQ=255) | ATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACATG > NZ_CP034943/112454‑112728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |