New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 91969	NA (NA)	15 (0.080)	6/250	NT	NA	intergenic (+131/‑39)	EO946_RS00485/EO946_RS00490	16S ribosomal RNA/23S ribosomal RNA
	?	NZ_CP034943	91973 =	NA (NA)					intergenic (+135/‑35)	EO946_RS00485/EO946_RS00490	16S ribosomal RNA/23S ribosomal RNA

ACCTCCTTTCTAAGGATATTTACGGAATATAAGACCTTGGGTCTTATAAACAGAACGTTCCCTGTCTTGTTTAGTTTTGAAGGATCATTCCTTCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/91830‑91969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTAAGACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACGAACACCGATATGCTTCGGGGAGCTGTAAGCAAGCTTTGATC  >  NZ_CP034943/91973‑92111                                                                                                                                                                                                                                                                                         ACCTCCTTTCTAAGGATATTTACGGAATATAAGACCTTGGGTCTTATAAACAGAACGTTCCCTGTCTTGTTTAGTTTTGAAGGATCATTCCTTCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAA                                                                                                                                             <  2:711873/140‑1                                                      AACGTTCCCTGTCTTGTTTAGTTTTGAAGGATCATTCCTTCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGC                                                                                        >  2:2625838/1‑140                                                         ggTCCCTGTCTTGTTTAGTTTTGAAGGATCATTCCTTCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACAGTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCA                                                                                     <  2:404640/138‑1                                                                                AAGGATCATTCCTTCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGGGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGA                                                              >  1:1615640/1‑140                                                                                             TCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTATCGGTTAAGTTAGAAAGGGCGCACGGTGGCTGCCTTGGCACTAGGAGCCGATGAAGGAC                                                 >  1:1006472/1‑140                                                                                             TCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGAC                                                 >  1:1316496/1‑140                                                                                             TCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGAC                                                 >  2:346410/1‑140                                                                                             TCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGAC                                                 >  2:1572806/1‑140                                                                                             TCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGAC                                                 >  1:210361/1‑140                                                                                             TCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGGTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGAC                                                 >  2:1572865/1‑140                                                                                              CGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACG                                                >  1:657898/1‑140                                                                                              CGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACG                                                >  1:777126/1‑140                                                                                              CGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACG                                                >  1:3060089/1‑140                                                                                              CGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACG                                                >  1:2786946/1‑140                                                                                              CGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACG                                                >  1:1954015/1‑140                                                                                                   CGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACG                                           <  1:346410/140‑1                                                                                                                                        TTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACGAACACCGATATGCTTCGGGGAGCTGTAAGCAAGCTTT      <  1:543154/140‑1                                                                                                                                        TTCAAGTAATACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACGAACACCGATATGCTTCGGGGAGCTGTAAGCAAGCTTT      <  1:2934070/140‑1                                                                                                                                            AGTAAGACAAGATCTCACCCAGTGATTCTATGTAACGGTTCAGCTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACGAACACCGATATGCTTCGGGGAGCTGTAAGCAAGCTTTGATC  <  2:2758732/140‑1                                                                                                                                                                                                                                                                                         ACCTCCTTTCTAAGGATATTTACGGAATATAAGACCTTGGGTCTTATAAACAGAACGTTCCCTGTCTTGTTTAGTTTTGAAGGATCATTCCTTCGAAACGTGTTCTTTGAAAACTAGATAACAGTAGACATCACATTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/91830‑91969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTAAGACAAGATATCACATAGTGATTCTTTTTAACGGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACGAACACCGATATGCTTCGGGGAGCTGTAAGCAAGCTTTGATC  >  NZ_CP034943/91973‑92111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.