| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 871,770 | T→C | 5.0% | D315D (GAT→GAC) | EO946_RS04420 → | ABC transporter ATP‑binding protein/permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 871,770 | 0 | T | C | 5.0% | 395.1 / 7.4 | 119 | D315D (GAT→GAC) | EO946_RS04420 | ABC transporter ATP‑binding protein/permease |
| Reads supporting (aligned to +/- strand): ref base T (39/73); new base C (3/3); total (42/77) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
GGTGATGTTGTTGCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCAAAGCCGAGGGAAACGATCGCG > NZ_CP034943/871633‑871908 | ggTGATGTTGTTGCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGa > 1:420988/1‑140 (MQ=255) gTGATGTTGTTGCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAg > 2:2804369/1‑140 (MQ=255) gATGTTGTTGCGCTTATTAACTAGGCAACACGAATTACGGGTGCGGTTTCGATGTTTCCGTTTTTGATTAGGATTTTCACTAGGGCGAAGGCTTGCGGTGATAGAATCGGCGCGGTGCTTGAAACGGAAGGCGATGAGCg > 2:810427/1‑140 (MQ=255) tttcGATTATTAACTACGAAACACGAATTCCGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGaa < 1:406059/137‑1 (MQ=255) ttgCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGaa < 1:1652796/140‑1 (MQ=255) ttgCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGaa < 1:313647/140‑1 (MQ=255) ttgCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGGTTCCGTTTTTGATTATGATTGTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGaa < 2:1080934/140‑1 (MQ=255) ttgCGATTATTAACTACGCAACACGAATTACGGGGGCGCTTTCGATGTTTCCGTTTTTGTTTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATATAATCTTAGAGGTTATTTAAACGGAAGGCGATGAGCgggttgaa < 2:1978794/140‑6 (MQ=255) ttgCGATTATTAACCACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTGACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGaa < 2:334648/140‑1 (MQ=255) tgCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAg < 1:1805074/140‑1 (MQ=255) tgCGATTATTAACTAAGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAg < 1:179302/140‑1 (MQ=255) gCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAgg > 1:2375165/1‑140 (MQ=255) ttattaACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGcatc < 2:2198422/140‑1 (MQ=255) cgccagacGAATTCCGGGTGCGCGTTCGATGTTTCCGTTTTTGATGATGATTTTGACTAGGGCGAAGGCTTCAGGTTATTGAATCGGCGAGGTGCTTGTAAATGAAGGCGATGAGCGGGAGGAAGGGATCATATCTGATc < 2:312256/134‑1 (MQ=255) cGCAAGAGGCATTACGGGTGCGGTTTCGTGTTTTCCGTTTTTGCTTATGATTTGCACTAGGGCGAACGGTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGGGATGAGCGGGAGGAAGGCATGATATCTGATc < 2:1650482/140‑1 (MQ=255) cGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATc > 1:1317089/1‑140 (MQ=255) cGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATc > 2:709195/1‑140 (MQ=255) cGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATc > 1:2259582/1‑140 (MQ=255) cGCAACACGAATTACAGGCGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACCCGGGCGAAGGCTTCAGGGGATAGAATCGGTGAGGTGCTTGAAACAGAAGGCGACGAGCGGGAGGAAGGCACCATATCTGATc > 2:520159/1‑140 (MQ=255) gCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCg < 2:481262/140‑1 (MQ=255) cAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTCTGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGGAGGCATCATATCTGATCgg > 2:1603796/1‑139 (MQ=255) cAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCCGGTGATAGAAACGGCGAGGTTATTGAAACGGAAGGCGATGAGCGGGAGGAAGGCTTCATATCTGATCgg > 2:122242/1‑139 (MQ=255) cAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGt > 1:1519291/1‑140 (MQ=255) cGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTc < 2:2216201/140‑1 (MQ=255) atgaCGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCggg < 1:662568/137‑1 (MQ=255) aTTCCGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCggg < 1:2636610/140‑1 (MQ=255) aTTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCggg < 1:1612758/140‑1 (MQ=255) aTTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCAATAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCggg < 2:1346570/140‑1 (MQ=255) gggTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGggagga < 2:742207/140‑1 (MQ=255) gggTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGggagga < 2:742266/140‑1 (MQ=255) tGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTg > 2:2878383/1‑140 (MQ=255) tGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTg > 2:1407051/1‑140 (MQ=255) gcgcTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGa < 2:2259582/140‑1 (MQ=255) cgcTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAg > 1:1017627/1‑140 (MQ=255) cgcTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAg > 1:1016444/1‑140 (MQ=255) cgcTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAg > 1:2195555/1‑140 (MQ=255) cgcTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAg > 1:1574618/1‑140 (MQ=255) cgcTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAg > 1:1097147/1‑140 (MQ=255) cTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGtt > 1:1557360/1‑140 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:1582091/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:281557/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:281558/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:1137529/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:1160237/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:1017627/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:1016444/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 1:1992335/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 1:2031822/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 1:491958/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 1:2383183/140‑1 (MQ=255) tttCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 1:2749055/140‑1 (MQ=255) tttCGATGCTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGttt < 2:284425/140‑1 (MQ=255) gTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATg < 1:1202834/140‑1 (MQ=255) gTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATg < 1:1402390/140‑1 (MQ=255) gTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATg < 1:2637459/140‑1 (MQ=255) tCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTAt > 2:3102139/1‑140 (MQ=255) tCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTAt > 1:222001/1‑140 (MQ=255) tCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTAt > 1:2516775/1‑140 (MQ=255) tCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTAt > 1:283462/1‑140 (MQ=255) cGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGCTCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATcc < 2:1322257/140‑1 (MQ=255) cGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATcc < 1:402818/140‑1 (MQ=255) cGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATcc < 2:1316652/140‑1 (MQ=255) ttGATTATGATTTTCACTAGGGCGAAGGCTTCAGTTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCg < 2:106853/140‑1 (MQ=255) ttGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCg < 1:57919/140‑1 (MQ=255) ttGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCg < 1:2936143/140‑1 (MQ=255) ttGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCg < 2:1981210/140‑1 (MQ=255) ttGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCg < 2:596104/140‑1 (MQ=255) tATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATc < 1:2796606/140‑1 (MQ=255) tGATTTTCACTAGGGCGCAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCt < 2:1614831/140‑1 (MQ=255) ttttCACGAGGGCGATTGATTCAGGTGATAGAATCGGCTAGGTGCTTGAAACGGAAGGGGATGAGAGGGAGGAAGGCATCATATCGGATAGTTTGTCGGGGAGGATTGAGTTTGAGGATGTATCCTTGCGTTATCCTGat < 2:134570/140‑2 (MQ=255) tCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATg > 2:1817384/1‑140 (MQ=255) aCTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGa < 1:3102139/140‑1 (MQ=255) aCTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGa < 2:22553/140‑1 (MQ=255) cAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCgg > 1:45491/1‑140 (MQ=255) cAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCgg > 1:2119865/1‑140 (MQ=255) aGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGa < 2:2444452/140‑1 (MQ=255) aGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGa < 2:2528970/140‑1 (MQ=255) aGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGa < 1:2804369/140‑1 (MQ=255) aGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGa < 2:1568964/140‑1 (MQ=255) aGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGa < 2:1302950/140‑1 (MQ=255) aGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGACGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGa < 2:2830062/140‑1 (MQ=255) aTAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGcat < 2:447377/52‑1 (MQ=255) aTAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGcat > 1:447377/1‑52 (MQ=255) aTAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGtc > 1:490762/1‑140 (MQ=255) aTAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGta > 2:2259319/1‑139 (MQ=255) aGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGtctc > 2:2769950/1‑140 (MQ=255) aGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGtctc > 2:2658828/1‑140 (MQ=255) aTCGGCGAGGTGCCTGAAACGGACGGCGAGGAGCGGGAGGACGGCATCATATCTGATCGTTTGTCGGGGAGGATTGTGTTTCAGCATGTCTCCTTCCGTTATCCTGAAATGGACATAGAAGCGCTGCGGAATGTCTCAtt < 2:1471345/140‑1 (MQ=255) aacgCGAGGTGCTTGAAACGGAATTAAATGAGAGGTAGGAAGTCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCAttt > 2:2099685/4‑140 (MQ=255) ggCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTc > 2:474439/1‑140 (MQ=255) aGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCa < 2:420988/140‑1 (MQ=255) aGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCa < 2:423198/140‑1 (MQ=255) aGGTGCTTGAAACAGAAGGCGACGAGCGGGAGGAAGGCACCATATCTGATCGTTTGTCAGGACGGATTGAGTTTCAGCATGTATCCTTTCGCTATCCTGAAATGGACAGAGAAGCGCTCAGGAATGTCTCATTTTCCGCa < 1:2196015/140‑1 (MQ=255) aGGTGCTTGAAACAGAAGGCGACGAGCGGGAGGAAGGCACCATATCTGATCGTTTGTCAGGACGGATTGAGTTTCAGCATGTATCCTTTCGCTATCCTGAAATGGACAGAGAAGCGCTCAGGAATGTCTCATTTTCCGCa < 1:520159/140‑1 (MQ=255) gTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCaaa > 1:2371641/1‑140 (MQ=255) gTGCTTGAAACAGAAGGCGACGAGCGGGAGGAAGGCACCATATCTGATCGTTTGTCAGGACGGATTGAGTTTCAGCATGTATCCTTTCGCTATc > 2:3008943/1‑94 (MQ=255) gTGCTTGAAACAGAAGGCGACGAGCGGGAGGAAGGCACCATATCTGATCGTTTGTCAGGACGGATTGAGTTTCAGCATGTATCCTTTCGCTATc < 1:3008943/94‑1 (MQ=255) ttGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCAAAGCCg < 2:2195555/140‑1 (MQ=255) ggAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTAATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCAAAGCCGAGGGaaa > 1:789301/1‑140 (MQ=255) aTGAGCGGGAGGAAGGCATCATATCGGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCAAAGCCGAGGGAAACGATcgcg < 2:892760/140‑1 (MQ=255) | GGTGATGTTGTTGCGATTATTAACTACGCAACACGAATTACGGGTGCGCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACTAGGGCGAAGGCTTCAGGTGATAGAATCGGCGAGGTGCTTGAAACGGAAGGCGATGAGCGGGAGGAAGGCATCATATCTGATCGTTTGTCGGGGAGGATTGAGTTTCAGCATGTATCCTTCCGTTATCCTGAAATGGACAGAGAAGCGCTGCGGAATGTCTCATTTTCCGCAAAGCCGAGGGAAACGATCGCG > NZ_CP034943/871633‑871908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |