| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 266,842 | T→C | 8.3% | C49C (TGT→TGC) | kdgD → | 5‑dehydro‑4‑deoxyglucarate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 266,842 | 0 | T | C | 8.3% | 534.4 / 28.1 | 172 | C49C (TGT→TGC) | kdgD | 5‑dehydro‑4‑deoxyglucarate dehydratase |
| Reads supporting (aligned to +/- strand): ref base T (78/78); new base C (7/7); total (87/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 174 total aligned reads displayed.
TATGAGAAAAGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACTTGAAT > NZ_CP034943/266704‑266972 | tATGAGAAAAGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTtgtg > 2:928418/1‑140 (MQ=255) agaAAAGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTc < 1:166437/140‑1 (MQ=255) aaaaGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTg > 2:2403526/1‑140 (MQ=255) aaaGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTgg > 2:60101/1‑140 (MQ=255) aaaGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTgg > 1:1911039/1‑140 (MQ=255) aaGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGt > 2:2665848/1‑140 (MQ=255) aaGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGt > 2:239446/1‑140 (MQ=255) gCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGa > 1:60340/1‑140 (MQ=255) aTCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAAtctct < 1:672158/140‑1 (MQ=255) ggTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCa > 2:3020096/1‑140 (MQ=255) ttCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCagaaa > 2:192315/1‑140 (MQ=255) tCCGGTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAACATTGAGTTTTTGCTGAATGAGGGCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCagacgg > 2:2667837/1‑137 (MQ=255) tCCGGTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAACATTGAGTTTTTGCTGAATGAGGGCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCagaagg > 2:489429/1‑138 (MQ=255) tCCGGTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAACATTGAGTTTTTGCTGAATGAGGGCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCagaagg > 2:2419981/1‑138 (MQ=255) tCCGGTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAACATTGAGTTTTTGCTGAATGAGGGCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCagaagg > 2:159442/1‑138 (MQ=255) tCCGGTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAACATTGAGTTTTTGCTGAATGAGGGCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCagaagg > 2:1230601/1‑138 (MQ=255) tCCGGTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAACATTGAGTTTTTGCTGAATGAGGGCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATATCTCAGCCagaagg > 2:1473891/1‑138 (MQ=255) tCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCagaaag > 2:1410098/1‑140 (MQ=255) tCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCagaaag > 2:1610417/1‑140 (MQ=255) tCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCaga < 2:2868433/137‑1 (MQ=255) tCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCaga < 2:2815567/137‑1 (MQ=255) cgtttGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGGTTGGAAGCGATTTTTATCGCTTGTGGGTATGGTGAATTTCAATCTCTCAGCCagaaagaa < 2:1814133/137‑1 (MQ=255) ccTTTTAACTCACAAGGAACACTGGAGGAAGCAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTTGAAGCGATTTTTATCGCTTGTGTGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCa < 1:1619081/140‑1 (MQ=255) ccTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGTCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCa < 1:1506218/140‑1 (MQ=255) acaAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGTAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAg > 2:1565189/1‑140 (MQ=255) acaAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTTGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCATAAAGAATACGAGCAAATGGTGGacg > 2:1183687/1‑138 (MQ=255) acaAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGACTACGAGCAAATGGTGGAAg > 1:2926121/1‑140 (MQ=255) acaAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAg > 2:2646031/1‑140 (MQ=255) acaAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAg > 1:2736981/1‑140 (MQ=255) acaAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGACAGAAAGAATACGAGCAAATGGTGGAAg > 1:1870285/1‑140 (MQ=255) caAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGt > 2:3088433/1‑140 (MQ=255) aaGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCaaa > 1:2828769/1‑129 (MQ=255) aaGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCaaa > 1:2333430/1‑129 (MQ=255) aaGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTc < 2:477498/140‑1 (MQ=255) aaGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTc < 2:2140385/140‑1 (MQ=255) aaGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTc > 1:1354903/1‑140 (MQ=255) aaGGAAAAATTGATTATGTAGCTCTTTTTAAAAATATCGAGTTTTTGGTGGAATAAGTATTGTAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAATAATACGAGCAAATGTTGGAAGTc < 2:2140593/140‑1 (MQ=255) ggaggaAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCgg > 2:1650704/1‑140 (MQ=255) ggaggaAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCgg > 1:2854714/1‑140 (MQ=255) ggaggaAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTGGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCgg > 1:1328902/1‑140 (MQ=255) ggaAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCTGCCAGAAAGAATACGAGCAAATGGTGGAAGTAGCACTCTCGGCAg > 2:2340399/1‑140 (MQ=255) ggaAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAg > 1:1989628/1‑140 (MQ=255) ggaAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGAGTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAg > 2:2345765/1‑140 (MQ=255) gaagaaGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGc > 2:2490601/1‑140 (MQ=255) gaagaaGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGc > 2:1208887/1‑140 (MQ=255) gaagCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCgg > 1:503408/1‑140 (MQ=255) ctctTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCggagga < 2:500179/140‑1 (MQ=255) tctTTTTCAAAATATCGTGTTTTTTGTTGAAGTATGCTTTGAAGCTATTTTTATCGCTTGTTGTTATGGTGAATTTCAATCTCTCAGGCAGAAAGAATACTAGCAAATGGTGGTAGTAGCAATCTCGGCAGCCGTTGGaa < 2:1232784/140‑1 (MQ=255) tctTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGaa < 2:855500/140‑1 (MQ=255) tctTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGaa < 1:3020096/140‑1 (MQ=255) tctTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGaa < 1:3018202/140‑1 (MQ=255) tttttCAAAATATCGAGTTTTGGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAg > 2:2326173/1‑140 (MQ=255) ttCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGtt < 2:2094139/140‑1 (MQ=255) tCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTc < 2:826888/140‑1 (MQ=255) tCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTc < 2:2002984/140‑1 (MQ=255) tCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTc < 2:2769879/140‑1 (MQ=255) cAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGCGGAAAGGTTcc > 2:2731497/1‑140 (MQ=255) cAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTcc > 2:3056195/1‑140 (MQ=255) aaaaTATCTAGTTTTTGGTTGAAGAATGATTGTAAGCGATTTTTATCGATTGTTGGTCTGGTGAATTTAAATCTCTCTTCAAGATATAATACGAGCAATTGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCg < 2:1027872/140‑1 (MQ=255) aaaaTATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTTAATTTCAATCTCTCAGCCATAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCg < 2:2434714/140‑1 (MQ=255) aaTCTCGAGTTTTTGGTGGAAGAAGGCTTGGAAGAGATTTTTATCTCTTGTGGGTCTGTTTAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGCTTCCGGt < 1:205764/140‑1 (MQ=255) aaTATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGt < 1:1240321/140‑1 (MQ=255) aaTATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGt < 1:2702991/140‑1 (MQ=255) tCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCACATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTac > 2:723396/1‑140 (MQ=255) tCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTac > 2:2674933/1‑140 (MQ=255) ccagatgttGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTaca < 2:295893/133‑1 (MQ=255) cGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTaca < 1:922382/140‑1 (MQ=255) cGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTaca < 2:1989628/140‑1 (MQ=255) cGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTaca < 1:3088433/140‑1 (MQ=255) gaagaaGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCACATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGggcgg > 2:131201/1‑140 (MQ=255) aagaagGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGggcggc < 1:1937247/140‑1 (MQ=255) aagaagGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGggcggc < 1:805667/140‑1 (MQ=255) aagaagGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGggcggc < 1:2132067/140‑1 (MQ=255) aagaagGCTTGGAAGCGATTTTTATCGCTCGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGggcggc < 1:1187738/140‑1 (MQ=255) aagaagGCGTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATGTCACTCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGggcggc < 1:2140972/140‑1 (MQ=255) aagGCTTGGAAGCTATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAAc < 1:1697167/140‑1 (MQ=255) ggCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGACTACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCt < 1:2646031/140‑1 (MQ=255) ggCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCt < 1:122901/140‑1 (MQ=255) ggCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCt < 1:2997327/140‑1 (MQ=255) ggCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCt < 1:2665848/140‑1 (MQ=255) ggCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCt < 1:2418420/140‑1 (MQ=255) ggCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCt < 1:239446/140‑1 (MQ=255) ggCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCAGAAGGAATATGAGCAAATGGTGGAAGTCGCAGTCTCGGCAGCCGGAGGAAAGGTGCCGGTCTACACGGGGGTGGGCGGCAACCt < 1:1473891/140‑1 (MQ=255) ggCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCAGAAGGAATATGAGCAAATGGTGGAAGTCGCAGTCTCGGCAGCCGGAGGAAAGGTGCCGGTCTACACGGGGGTGGGCGGCAACCt < 1:159442/140‑1 (MQ=255) ggCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCAGAAGGAATATGAGCAAATGGTGGAAGTCGCAGTCTCGGCAGCCGGAGGAAAGGTGCCGGTCTACACGGGGGTGGGCGGCAACCt < 1:2471353/140‑1 (MQ=255) ggCTTGGAAGCGATATTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCAGAAGGAATATGAGCAAATGGTGGAAGTCGCAGTCTCGGCAGCCGGAGGAAAGGTGCCGGTCTACACGGGGGTGGGCGGCAACCt < 1:2419981/140‑1 (MQ=255) ggCTTGGAAGCGAGAGTTATCGCTTGCGGGTCTGGTGAATTCCAATCTCTCAGCCAGAAGGAATATGAGCAAATGGTGGAAGTCGCAGTCTCGGCAGCCGGAGGAAAGGTGCCGGTCTACACGGGGGTGGGCGGCAACCt < 1:2667837/140‑1 (MQ=255) ggAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTa < 1:417215/140‑1 (MQ=255) ggAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTa < 1:1410098/140‑1 (MQ=255) ggAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTa < 1:334129/140‑1 (MQ=255) aaGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACa < 1:73922/140‑1 (MQ=255) aaGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACa < 1:928418/140‑1 (MQ=255) cGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCa > 2:806572/1‑140 (MQ=255) gATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCAc > 1:2532838/1‑140 (MQ=255) aTTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGc < 1:1618773/86‑1 (MQ=255) aTTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACt > 1:2001635/1‑140 (MQ=255) aTTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACt > 1:1033954/1‑140 (MQ=255) aTTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACt > 1:1233536/1‑140 (MQ=255) aTTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACt > 1:429128/1‑140 (MQ=255) tATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACTTGAAt < 1:485771/140‑1 (MQ=255) | TATGAGAAAAGCACCCGCTGGAATCTTAGGTTTTCCGGTTGCACCTTTTAACTCACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCAAAATATCGAGTTTTTGGTGGAAGAAGGCTTGGAAGCGATTTTTATCGCTTGTGGGTCTGGTGAATTTCAATCTCTCAGCCAGAAAGAATACGAGCAAATGGTGGAAGTCGCAATCTCGGCAGCCGGAGGAAAGGTTCCGGTTTACACGGGGGTGGGCGGCAACCTCAGTACAGCACTTGAAT > NZ_CP034943/266704‑266972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |