| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,992,887 | G→A | 13.6% | T258I (ACA→ATA) | walK ← | cell wall metabolism sensor histidine kinase WalK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,992,887 | 0 | G | A | 13.6% | 650.4 / 74.5 | 235 | T258I (ACA→ATA) | walK | cell wall metabolism sensor histidine kinase WalK |
| Reads supporting (aligned to +/- strand): ref base G (93/110); new base A (18/14); total (111/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
Only 100 of 235 total aligned reads displayed.
AGGCTGTTTCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGTTTTCTC > NZ_CP034943/3992750‑3993021 | aGGCTGTTTCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTc < 1:590542/140‑1 (MQ=255) ggCTGTTTCACGTGCAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGCTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCa < 2:1774887/140‑1 (MQ=255) ggCTGTGTCACGTGACACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCa < 2:1358615/140‑1 (MQ=255) gTTTCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGc > 2:1340586/1‑140 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGcc > 2:1531737/1‑140 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGcc < 2:2281461/140‑1 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGcc > 1:31239/1‑140 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGcc > 1:1602918/1‑140 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGcc > 1:2024384/1‑140 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGcc > 1:963719/1‑140 (MQ=255) tttCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGcc > 1:2692606/1‑140 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTggg < 2:2941683/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTggg < 2:1867983/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTggg < 2:2148619/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTggg < 1:1481033/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTggg < 2:2365367/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCCggg < 2:1550974/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTggg < 1:850166/140‑1 (MQ=255) aCGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTggg < 1:1316701/140‑1 (MQ=255) cGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAAGAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGc < 2:1679048/140‑1 (MQ=255) gAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATc > 2:1156530/1‑140 (MQ=255) aaCGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCtt > 2:1185846/1‑140 (MQ=255) ttCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCGGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAg > 1:1739427/1‑140 (MQ=255) ttCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAg > 1:2466614/1‑140 (MQ=255) ttCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTggg < 1:2946640/130‑1 (MQ=255) tCAGCAGCTCCCGCGCCGGGCTGTTTAAGAGAAAAATTGCCACGATGCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCATTCTGTCATCGCCTGTGCATCTTAAAGc > 2:217308/1‑140 (MQ=255) tCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGc > 2:1164927/1‑140 (MQ=255) cagcagCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 1:1793479/140‑1 (MQ=255) cagcagCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 1:94558/140‑1 (MQ=255) cagcagCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 2:461811/140‑1 (MQ=255) gcagcTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGctct < 2:2079281/140‑1 (MQ=255) gcagcTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGctct < 1:1150939/140‑1 (MQ=255) gcagcTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGctct < 1:255440/140‑1 (MQ=255) gcagcTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGctct < 2:2925569/140‑1 (MQ=255) cTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCg > 2:553690/1‑140 (MQ=255) cTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCg > 1:706372/1‑140 (MQ=255) cTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCg > 1:2199732/1‑140 (MQ=255) cAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTa < 1:1544752/140‑1 (MQ=255) cGGGCTGTTTAAGAGAATAATGGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGAt < 2:2060688/140‑1 (MQ=255) gggCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGAtt > 2:1613673/1‑140 (MQ=255) gCTGTTGAAGAGAATAAGTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATTACAGAGGCAAGCGTTCTGCGCTCTCCTTCTGTCATCGCCGGGGCATCTTCCAGCTCTCTCGTTAAGTGATTaa < 2:280126/140‑1 (MQ=255) cTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTaaa < 2:1589687/140‑1 (MQ=255) cTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTaaa < 2:637245/140‑1 (MQ=255) gTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACg < 2:2421079/140‑1 (MQ=255) aataatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 2:1414374/110‑1 (MQ=255) aataatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 2:3091724/110‑1 (MQ=255) aataatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCaa > 1:2248719/1‑140 (MQ=255) aataatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCaa > 2:2867509/1‑140 (MQ=255) aataatTGCCCCGGTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct > 1:3091724/1‑110 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATGACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 1:1962488/108‑1 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATGACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct > 2:1962488/1‑108 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGct < 1:55053/108‑1 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGc > 2:2242321/1‑140 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGc > 2:812962/1‑140 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGc > 2:2211875/1‑140 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGc > 1:2003683/1‑140 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGc > 1:1882078/1‑140 (MQ=255) taatTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGc > 1:2119774/1‑140 (MQ=255) atTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTg < 1:1471043/140‑1 (MQ=255) tGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGcc < 1:2642239/140‑1 (MQ=255) ccccGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCa > 1:22950/1‑140 (MQ=255) ccGTTTCGTTTTGTGGCGATAACGCCGTCTGTCATATAGGCAAGAACAGAGGCAAGCTTTCTGCGCTCTCCGTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAAt < 2:1087039/140‑1 (MQ=255) tCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCACGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat < 1:2783268/140‑1 (MQ=255) tCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat < 2:3073429/140‑1 (MQ=255) tCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat < 1:1696454/140‑1 (MQ=255) tCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat < 1:761697/140‑1 (MQ=255) tCGGTGTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat < 2:2499869/140‑1 (MQ=255) gTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTcatcat > 2:39311/1‑140 (MQ=255) gTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCAGCCCAATTTcatcat > 1:1534249/1‑140 (MQ=255) tgGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCg < 1:1362879/140‑1 (MQ=255) tgGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCg > 1:65190/1‑140 (MQ=255) tgGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGACTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCACGCTGCCCAATTTCATCATGCCCg > 2:1258822/1‑140 (MQ=255) ggCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGt < 2:93268/140‑1 (MQ=255) ggCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGt < 2:1540691/140‑1 (MQ=255) aTAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACtt > 1:998883/1‑140 (MQ=255) tCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCtt > 2:2962648/1‑140 (MQ=255) cATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCg < 1:1003479/140‑1 (MQ=255) aaTAACAGAGGCACGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTAGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTcc > 1:142555/1‑140 (MQ=255) aaTAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTaa < 2:787684/69‑1 (MQ=255) aaTAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTcc > 2:728332/1‑140 (MQ=255) tAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCt < 1:1159734/140‑1 (MQ=255) tAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCt < 2:30561/140‑1 (MQ=255) agGCAAGCTTTCTGCGCTCTCCTTCTGTCCTCGCCTGGGCATCTTCAAGCTCTCGCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGACATTCCCTTTCGCa > 2:880767/1‑140 (MQ=255) agGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCa > 1:422819/1‑140 (MQ=255) agGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCa > 1:808956/1‑140 (MQ=255) agGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCa > 2:782872/1‑140 (MQ=255) agGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCa > 1:1243182/1‑140 (MQ=255) agGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCGTCAAGCTCTCTCGTAAAGTGATTAAACGGAGTGGCAACCTGCCCAATTTCAACATGCCAGTACTTTTTAACCTTACTCTAGAACTTCCCTTTCGCa > 2:352298/1‑140 (MQ=255) ggCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCaa < 2:2672417/140‑1 (MQ=255) ggCAAGCTTTCTGCGCTCTCCTTCTATCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCaa < 2:1071756/140‑1 (MQ=255) gCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATTCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCaat > 1:139715/1‑139 (MQ=255) gCAAGCTTTCTGCGCTATCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGAAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACATTCCTCGAGAAATTCCCTTTATCAAg > 1:880814/1‑140 (MQ=255) cTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGc < 1:2867509/140‑1 (MQ=255) cTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGc < 1:1183193/140‑1 (MQ=255) tGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat < 2:3003883/84‑1 (MQ=255) tGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTtcat > 1:3003883/1‑84 (MQ=255) gcTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGt < 1:1509933/140‑1 (MQ=255) ctctCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTaa > 1:2332917/1‑98 (MQ=255) tctcCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCTTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGttt > 2:3025194/1‑140 (MQ=255) cTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGTTTtctc < 2:2109496/140‑1 (MQ=255) | AGGCTGTTTCACGTGAAACGTTCAGCAGCTCCAGCGCCGGGCTGTTTAAGAGAATAATTGCCCCGTTTCGGTTTGTGGCGATAACGCCGTCTGTCATATAGGCAATAACAGAGGCAAGCTTTCTGCGCTCTCCTTCTGTCATCGCCTGGGCATCTTCAAGCTCTCTCGTTAAGTGATTAAACGTAGTGGCAAGCTGCCCAATTTCATCATGCCCGTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGTTTTCTC > NZ_CP034943/3992750‑3993021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |