New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	607647 =	182 (0.830)	15 (0.070) +GGCTCCCGT	3/246	9.8	8.5%	coding (490/1125 nt)	EO946_RS03185	collagen‑like protein
	?	NZ_CP034943	= 607682	167 (0.770)					coding (525/1125 nt)	EO946_RS03185	collagen‑like protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/607768‑607647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCC  <  NZ_CP034943/607682‑607544                                                                                                                           |||||||||                                                                                                                                            CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTGGCTCCCGTGGCTCCcgg                                                                                                                                    >  2:3180883/1‑137                                                                                                                      CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 >  2:405908/1‑58                                                                                                                      CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 >  2:3285841/1‑58                                                                                                                      CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 >  2:1460969/1‑58                                                                                                                       cgGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 <  1:1463519/55‑1                                                                                                                       cgGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 <  1:1468540/55‑1                                                                                                                       CTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 >  2:1468540/1‑57                                                                                                                       CTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                 >  2:1463519/1‑57                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTg                                                                                                        >  1:1238416/1‑47                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCCCCTGTGGCTCCCGTGGCCCCGG                >  2:822842/1‑136                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCT                                                                 <  1:1963740/87‑1                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCT                                                                 <  1:1748301/87‑1                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCT                                                                 >  2:1963740/1‑87                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCT                                                                 >  2:1748301/1‑87                                                                                                                         GTGGCTCCCGTCGCTCCGGTTGGTCCGGCGTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCCCCTGTGGCTCCCGTGGCCCCGG                <  1:822842/136‑1                                                                                                                            GCTCCCGTCGCTCCGGGTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCC         <  2:2067172/140‑1                                                                                                                              TCCCGTCGCTCCGGGTGGTCCGGCGTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGG       <  2:799785/140‑1                                                                                                                               ccgGTCGCTCCGGTTGGTCCGGCTGCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGC      <  1:3380376/137‑1                                                                                                                               CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGT                                                                                                         >  1:2092560/1‑41                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTC   >  1:2873791/1‑140                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTC   <  2:543684/140‑1                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGATGGTCCGGCTTCCCCGGTACCTCCTGTCGCTCCCGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTC   >  1:3142876/1‑140                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG                                                                                                          >  1:2651621/1‑37                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG                                                                                                          <  2:2651621/37‑1                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG                                                                                                          >  1:735550/1‑37                                                                                                                                  GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG                                                                                                          <  2:735550/37‑1                                                                                                                                   TCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGGTGGTCCGGCTGCCCCAGTTGCTCCGGTGGCTCCCGTGGCTCCGGCTGGTCCGGggtcg  >  1:1559509/1‑135                                                                                                                                   TCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCC  >  1:1896015/1‑140                                                                                                                           |||||||||                                                                                                                                            CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/607768‑607647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCC  <  NZ_CP034943/607682‑607544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.