| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 1437935 = | 142 (0.650) | 3 (0.010) | 3/248 | 9.8 | 2.2% | coding (738/1821 nt) | kinA | sporulation kinase KinA |
| ? | NZ_CP034943 | = 1437931 | 132 (0.650) | coding (734/1821 nt) | kinA | sporulation kinase KinA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGACTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/1438080‑1437935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCACG < NZ_CP034943/1437931‑1437794 CCGACTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGC < 1:2378537/140‑1CCGACTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATGGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTGTGGAATTTTTTCCTTGAAGAGATATCGATCAGC < 1:199516/140‑1 GACTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAG < 2:2774228/140‑1 CTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:1139907/140‑1 CTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:334388/140‑1 CTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:2940975/140‑1 CTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:2757050/140‑1 CTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:2755538/140‑1 CTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:2390133/140‑1 TCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCAG < 2:894226/140‑1 TCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCAG < 2:728143/140‑1 ATTCATAAACACCCATTTTCCAGTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTGTGGAATTTTTTCGGGGAAGAGCTCTCGTTCAGCAGCAGCT > 1:2115057/1‑140 ACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA < 1:2141128/127‑1 ACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCA > 2:2141128/1‑127 AATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGA > 2:1220277/1‑140 TTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAG < 1:1220277/140‑1 GCAGCAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTT > 2:2683580/1‑140 GCAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTC > 2:426228/1‑140 CAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCA < 1:307335/140‑1 CAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCA < 1:913276/140‑1 CAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCA < 1:101563/140‑1 CAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCA < 2:2952663/140‑1 CAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCA < 1:2670087/140‑1 CAGCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCA < 1:2352820/140‑1 GCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCCTTCGTATAATCCTGTTTTTCACG > 2:404757/1‑140 GCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCACG < 1:1638878/140‑1 GCTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCACG < 1:1995981/140‑1 GCTCAGCCTGCTGGATTTTGTAGACGGTCGGGGACGCATACACTTCTACATGAACAGGTGTGCCAACAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTGTGCATTCGTATACTCCTGTTTTTCACG < 1:3373675/140‑1 CCGACTCATTCATAAACACCCATTTTCCATTATGAATCACCGCAATGGTATCGATTGAATTTTGAATCAGCAGCTGATATCGTTCACGGCTTTTTTGCAGGATGGTTTGGAATTTTTTCCTTGAAGAGATATCGATCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/1438080‑1437935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTCAGCCTGCTGGTTTTTGTAGACGGTCGGGGACGCTTTCACTTCTAAATGAACAGGTGTGCCATCAAGCCTTTTCCACGTCTGTTCAATCATTCCAACTTCCATTCCTTTTTGCATTCGTATAATCCTGTTTTTCACG < NZ_CP034943/1437931‑1437794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |