Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP034943634,0520TG28.3% 257.5 / 34.6 159E573D (GAA→GAC) ‡EO946_RS03330ABC‑F family ATP‑binding cassette domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (49/65);  new base G (43/2);  total (92/67)
Fisher's exact test for biased strand distribution p-value = 8.75e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 166 total aligned reads displayed.

TCTGCATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATAATAA  >  NZ_CP034943/633915‑634190
                                                                                                                                         |                                                                                                                                          
  tGCATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGttctt                                                                                                                                        >  2:2263654/1‑140 (MQ=255)
  tGCATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGttctt                                                                                                                                        >  1:2392870/1‑140 (MQ=255)
    cATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTGTTCAATCCGACGGAGTCGTTGGGGgtctttg                                                                                                                                      >  1:1998406/1‑139 (MQ=255)
    cATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGttctttc                                                                                                                                      <  2:2369518/140‑1 (MQ=255)
     atggatggCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGttctttct                                                                                                                                     <  2:2412335/140‑1 (MQ=255)
            gCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCa                                                                                                                              >  1:3228414/1‑140 (MQ=255)
            gCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTCTTTGTTTTTGCa                                                                                                                              >  1:3228631/1‑140 (MQ=255)
            gCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGGATTTGTTTTTACa                                                                                                                              >  1:3053292/1‑140 (MQ=255)
            gCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGGTGTTTGTTTTTTCa                                                                                                                              >  1:2776239/1‑140 (MQ=255)
            gCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGGTGTTTGTTTTTGCa                                                                                                                              >  1:1024115/1‑140 (MQ=255)
             cTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAt                                                                                                                             <  2:3229948/140‑1 (MQ=255)
             cTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAt                                                                                                                             <  1:632331/140‑1 (MQ=255)
             cTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAt                                                                                                                             <  1:3081530/140‑1 (MQ=255)
             cTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAt                                                                                                                             <  1:2421053/140‑1 (MQ=255)
              ttGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTGCGTTCTTTTTcgaga                                                                                                                            >  2:1136354/1‑136 (MQ=255)
              ttGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGGTTCTTTTTACAtt                                                                                                                            >  2:1805962/1‑140 (MQ=255)
                gTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCt                                                                                                                          <  2:2392870/140‑1 (MQ=255)
                 tACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTGCTTTCTTTTTCCattatt                                                                                                                         >  2:284504/1‑140 (MQ=255)
                      tttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTACTGTTTTCTTCAATGGGTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGTCGTTCTGTCTTTTTGCATTAttgttat                                                                                                                    >  2:1297537/1‑138 (MQ=255)
                      tttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTTGCGTTGTTTCTTTTTGCATTCTTTttct                                                                                                                    >  2:682366/1‑140 (MQ=255)
                      tttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTGTTTTTCGAATCtttttat                                                                                                                    >  2:2973776/1‑138 (MQ=255)
                      tttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTttct                                                                                                                    >  2:2563347/1‑140 (MQ=255)
                      tttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTTCATTCtttttat                                                                                                                    >  1:3036985/1‑138 (MQ=255)
                       ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCATTCTTTttgtt                                                                                                                   >  2:2912952/1‑140 (MQ=255)
                       ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGCATGATTTttgtt                                                                                                                   >  2:724767/1‑140 (MQ=255)
                       ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGGTTGTTTTTGCATTGATTttctt                                                                                                                   >  2:466270/1‑140 (MQ=255)
                              tCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTTTTTTTGCATTGTTTTTATTATTAata                                                                                                            >  2:35406/1‑140 (MQ=255)
                                      gATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGtt                                                                                                    <  1:749033/140‑1 (MQ=255)
                                       aTTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATCGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTATTTTTACAATGTTTTTGTTGATCAAATTAAAGttt                                                                                                   >  1:2228230/1‑140 (MQ=255)
                                        tttCCGGATCACATAGCAATTCATCGTTATGAGTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGTCTTTGTTTTTCCATTCTTTTTCTTCTTCATATGAACCtttt                                                                                                  >  2:143239/1‑140 (MQ=255)
                                        tttCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGTGTTTTTTTTTGGATTTTTTTTGTTTTTTATATTAACGtttt                                                                                                  >  1:1960516/1‑140 (MQ=255)
                                        tttCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGGTTCTTTTTCCATTCTTTTTCTTGTTCATATGAACGtttt                                                                                                  >  2:142671/1‑140 (MQ=255)
                                            cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCCTATGAACGTTTTGAGt                                                                                              <  1:1136354/140‑1 (MQ=255)
                                            cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  2:2396216/140‑1 (MQ=255)
                                            cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  1:1805962/140‑1 (MQ=255)
                                            cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  1:1388348/140‑1 (MQ=255)
                                            cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  2:200397/140‑1 (MQ=255)
                                            cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  1:267469/140‑1 (MQ=255)
                                            cGGATCACATAGCAAGTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  2:1846564/140‑1 (MQ=255)
                                            agacagacaTAGCAATTCATCGTTATGACTAATGTTTTATTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                              <  1:3364071/134‑1 (MQ=255)
                                                           ttCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTTTGTTTGGCTTCTTTTTGTTGGTGCTATTAACGGTTTTGGTCAGGCTTAAACGAAg                                                                               >  1:2829986/1‑140 (MQ=255)
                                                           ttCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTGGTTTGGTTTTTCCTTATTTTTGTTGTTGAGATGTACGGTTTGTGTCAGGCTTAAACGAAg                                                                               >  1:1899271/1‑140 (MQ=255)
                                                           ttCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGCATTGTTTTTGTTCTTCATATGAACGTTTTGATTGAGGCTTaaaagaat                                                                               >  2:2779518/1‑134 (MQ=255)
                                                             cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTCTTTTTAGATTCTTTTTGTTATTCATATGAACGGTTTGAGTCAGGCTTTACCGAAGcc                                                                             >  2:1956772/1‑139 (MQ=255)
                                                             cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTCTTTCTTTTTGCATTATTTTTCTTCTTCATATTAAAGTTTTTAGTAAGGCTTAAccctgtct                                                                             >  2:3364071/1‑134 (MQ=255)
                                                             cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGGGTGGTTTTTTTTTCCCTTATTTTTGTTGTTGATATGAAAGTTTTGAGTGATGCTTTACAGAACCa                                                                             >  1:2648224/1‑140 (MQ=255)
                                                                cGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTGTTTTTCCATTCTTTTTGTTATTCATATGAACGTTTTGAGTCAGGCTTAAACGAAGCAGGc                                                                          >  2:1582254/1‑140 (MQ=255)
                                                                cGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGCATTGTTTTTGTTCTTCATATGAAAGTTTTTATTGAGGGTTTAACGAAGCAggg                                                                          >  2:2103136/1‑139 (MQ=255)
                                                                cGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTCTTTTTGCATTATTTTTATTCTTAATATGTACGTTTTTGGTGAAGGTTAAACGAACAAGGc                                                                          >  2:1522451/1‑140 (MQ=255)
                                                                cGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGGTTGCGGTGTTTGTTTTTGGAATGTTTTTGTTGTTCATATGAAGGTTTTTTGTGAGGCTTAAACGAAGCAggg                                                                          >  1:1690105/1‑139 (MQ=255)
                                                                 gTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGTGTTTGTTTTTGCATTCTTTTTGTTGTTCATATTAAAGTTTTTAGTCAGGGTTATACGAAACAcgcg                                                                         >  1:2128158/1‑140 (MQ=255)
                                                                  ttATGACTAATTTTTTCTTCAAGGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGGGTTTTGTTTTTACCATATTTTTATTATTGATATTTACTGTTTGAGTCAGGCTTAAACGAAGCAGGCgg                                                                        >  1:816299/1‑139 (MQ=255)
                                                                     tGACTGATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGGGTTTGTTTTTGCCATATTTTTGTTGTTGATATTAAAGTTTTGTGTGAGGGTTTAACCAAACAGGGGgttt                                                                     >  1:1428841/1‑140 (MQ=255)
                                                                           aTGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGa                                                               <  1:2912952/140‑1 (MQ=255)
                                                                           aTGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGa                                                               <  1:1448997/140‑1 (MQ=255)
                                                                           aTGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTCTTTCTTTTTCCATTCTTTTTCTTCTGCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGa                                                               <  1:2280539/140‑1 (MQ=255)
                                                                           aTGTTTTCTTCAATGGTTTGAACAGGGGCGTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAGTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGa                                                               <  1:559403/140‑1 (MQ=255)
                                                                           aTGTTTTCTTCAATGGTTCGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGGTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGa                                                               <  2:2706875/140‑1 (MQ=255)
                                                                            tGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCCTTGTTTTTTTTCTTGATATGTATGTTTTTTTTGAGGCGTAACCGGAGCAGGGGTTTTTTgggtt                                                              >  1:113575/1‑138 (MQ=255)
                                                                            tGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGAt                                                              <  2:2720745/140‑1 (MQ=255)
                                                                            tGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGAt                                                              <  2:113489/140‑1 (MQ=255)
                                                                            tGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGAt                                                              <  2:1453828/140‑1 (MQ=255)
                                                                            tGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTCTTTCTTTTTCCATTCTTTTTGTTCTTCATATGAAAGTTTTGAGTCAGGCTTAAACGAAGCAGGCGTTTTTTCGGAt                                                              >  2:2632593/1‑140 (MQ=255)
                                                                            agTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGCAATCTTTTTATTATTGATATGAACGTTTTTAGTCAGGCGTAAACGCAGCAGGCGTGTTTTAGGag                                                              >  2:564541/2‑139 (MQ=255)
                                                                                ttcttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTACATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCATAAACCAAGCAGGCGTTTTTTCGGATTCct                                                          >  2:1709836/1‑140 (MQ=255)
                                                                                ttcttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTCTTTTTCCATTATTTTTGTTATTAATAATAAAGTTTTTAAGAATGCTTTAACGAATCAGGCGTTTTTTGGGAttgat                                                          >  2:2084259/1‑137 (MQ=255)
                                                                                ttcttcAATGGTTGGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCct                                                          <  1:2853233/140‑1 (MQ=255)
                                                                                   ttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGGTTGTTTTTTCATTGTTTTTCTTGTTAATATTGACGTTTTTTGTGAGGGTTAACCGCAGCCGGGGTTTTTTGGGGTTGCTCtt                                                       >  2:1130835/1‑140 (MQ=255)
                                                                                         ggTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGAt                                                 <  2:3135913/140‑1 (MQ=255)
                                                                                         ggTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGAt                                                 <  1:1501870/140‑1 (MQ=255)
                                                                                              gAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCAtt                                            <  1:2563347/140‑1 (MQ=255)
                                                                                              gAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTGTCTTTTTCCATTCTTTTTCTTCTTGATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCAtt                                            <  1:1788351/140‑1 (MQ=255)
                                                                                               aaCAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTCTTTTTCCATTCTTTTTCTTCGTCATATTGACGTTTTGAGTCAGGCTTAAACGAAGCCGGCGTTTTTTAGGATTAGAGTTGCTGATTCAttt                                           >  2:2326090/1‑140 (MQ=255)
                                                                                                  aGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTtct                                        <  2:280917/140‑1 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTTGGGTTCTTTCTTTTTCCATTCTTTTTCTTATTCCTATGAACGTTTTTAGTTAGGGATAACCCAAGCAGGCGTTTTTTGGGATGTCTGTTGCGGATTGATTTTATcc                                      >  2:2737760/1‑140 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTATTTTTCCATTCTTTTTGTTCTTCATATGAACGGTTTGAGTCAGGGGTAAACGAAGAAGGCGTTTTTTGGGATTCCGCGTGGTGATTAATTTtctgc                                      >  2:1057374/1‑138 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTATTTTTCCATTCTTTTTCTTCTTCATATTAACGTTTTGATTCAGGCTTAACCGAAGAAGGCGTTTTTTAGGTTTCCAGTTTGTGATTAAttttgaac                                      >  2:584343/1‑136 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCATTCTTTTTAGTCTTGATATTAACGTTTTTAGTGAGGCTTAACCGAAAGAGGCGTTTTTTAGGTTTGCTCTTGCTGATTAATTTTCTcc                                      >  2:1457656/1‑140 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGGTTTTTGTGATTGCTCTTGCTGATTCATTTTGTcc                                      >  2:1982559/1‑140 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTCTTTTTACATTGTTTTTCTTCTTAATATGAACGTTTTGAGTCAGGCTTAAACGAAGCAGGCGTTTTTTGGGATTGCTCTTGGTGATTCATTTTGTcc                                      >  2:2552082/1‑140 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGCATTCTTTTTGTTCTTCATATGAACGTTTTTTGTCCGGCTTTACCGAAGCCGGCGTTTTTTCGGATTGCTCTTGGTGGTTCATTTTGTcc                                      >  1:2428516/1‑140 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTGTGCGGGGTTTATTTTTGCATTTTTTTTGTTGTTCATATTAACGTTTTTAGTCACGCTTAAACCAAACAGGCGTTTTTTAGGATTACTGTTTGTGATTAAttttatac                                      >  2:205498/1‑136 (MQ=255)
                                                                                                    tGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGGGGGGTTTGTTTTTGCATTATTTTTATTATTCATATTAAACTTTTTATTAAGGCTTAAACCACGCAGGCGTTTTTTAGGATTACTCTTGGTGGTTCAttttatac                                      >  2:882633/1‑136 (MQ=255)
                                                                                                       cTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAAt                                   <  2:1100822/140‑1 (MQ=255)
                                                                                                         tCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTCTTTGGTTTTACATTCTTTTTGTTGGTGAGATGTACGTGTTTAGTCAGGCTTAACCGAAGCCGGCGTTTTTTCGGGTTCCTCGTGGGGAGTCAGTTTGTGCaagta                                 >  2:1068735/1‑137 (MQ=255)
                                                                                                            aTTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAg                              <  2:770000/140‑1 (MQ=255)
                                                                                                                cttcAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCATTGTTTTTGTTCTTAATATGAAAGTTTTGAGTGAGGCTTAAACGAAGCAGGCGTTTTTTCGGATTCCTCTTTCTGATTAATTTTCTCCAATTAAAtctgg                          >  2:646626/1‑139 (MQ=255)
                                                                                                                 ttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                         <  1:441306/140‑1 (MQ=255)
                                                                                                                 ttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                         <  2:3036985/140‑1 (MQ=255)
                                                                                                                 ttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                         <  1:688566/140‑1 (MQ=255)
                                                                                                                        cGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGtttt                  <  1:1577451/140‑1 (MQ=255)
                                                                                                                           cGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTATTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGttttttt               <  2:1601811/140‑1 (MQ=255)
                                                                                                                           cGGAGTCGTTGGCGGTCTTTCTTTGTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGttttttt               <  1:564541/140‑1 (MQ=255)
                                                                                                                             gAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTtct             <  1:1563944/140‑1 (MQ=255)
                                                                                                                             gAGTCGTTGGCGTTCTTTCTTTGTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTtct             <  1:682366/140‑1 (MQ=255)
                                                                                                                                tCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCg          <  1:1057374/140‑1 (MQ=255)
                                                                                                                                        gttgttTCTTTTTCCATTCTTTTTCTTCTTAATATGAACGTTTTGATTCAGGCTTTAACGAAGCAGGCGTTTTTTAGGATTACTCTTTCTGATTCATTTTATACAATTAAAGCTTCTCTGTTTTTTTATACGTAtaataa  >  2:985501/1‑140 (MQ=255)
                                                                                                                                        gTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATTAACGTTTTTAGTCAGGCTTAAACGAAGCAGGCGTTTTTTAGGATTCCTATTGCTGATTAATTTTATCCAATTAAAGCTGCTCTGTTTTTTTATACGTAtaataa  >  2:2931326/1‑140 (MQ=255)
                                                                                                                                        gTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAAACGAAGCAGGCGTTTTTTAGGATTCCTCTTTCTGATTCATTTTCTCCAATTCAAGCTGCTCTTTTTTTTTATACGTAtaataa  >  2:2322511/1‑140 (MQ=255)
                                                                                                                                        gTTCTTTCTTTTTCCATTCTTTTTCTTCTTAATAAGAACGTTTTGAGTCAGGCTTAACCCAAGCAGGCGTTTTTTAGGATTACACTTTCTGATTAATTTTATACAAATAAAACATCTATGTTTTTTTATACGTAtaaaaa  >  2:928269/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                          
TCTGCATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGCTTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATAATAA  >  NZ_CP034943/633915‑634190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑