Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349432,991,2620GT27.5% 236.0 / 29.2 133intergenic (+63/‑144)gbsR/bslAtranscriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand):  ref base G (16/79);  new base T (35/1);  total (51/82)
Fisher's exact test for biased strand distribution p-value = 2.62e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 133 total aligned reads displayed.

GATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAGGGGGAATT  >  NZ_CP034943/2991125‑2991400
                                                                                                                                               |                                                                                                                                          
taTTGGCTGAAACGGCTTGCTG‑ATGGGTGCCAGAGCGGTTAAATTTTTAAATTTATACCGATTGAACAAAAGTAAAAAAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGaa                                                                                                                                          <  1:2753198/139‑1 (MQ=255)
 aTTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTT‑AATT‑AAT‑AAAAAT‑TTTaaa                                                                                                                                         >  1:552292/1‑140 (MQ=255)
  ttGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑AAAT‑ACT‑ACAAAA‑TTGaaaa                                                                                                                                        >  2:397034/1‑140 (MQ=255)
  ttGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑AAAT‑AAT‑AAAAAA‑TTTaaaa                                                                                                                                        >  2:446841/1‑140 (MQ=255)
  ttGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTATTTTTTTTTT‑AATT‑TAT‑ACAAAA‑TTGaaaa                                                                                                                                        >  2:2174262/1‑140 (MQ=255)
     gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑AATT‑AAT‑AACAAT‑TTGAAAAATa                                                                                                                                     >  2:2983850/1‑140 (MQ=255)
     gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTGTTTTGT‑AATT‑ACT‑ACAAAA‑TTTAAAAATa                                                                                                                                     >  2:3055693/1‑140 (MQ=255)
     gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTT‑AATT‑AAT‑AAAAATATTTaaaaaa                                                                                                                                      >  2:2721780/1‑139 (MQ=255)
     gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTTTGT‑AATT‑AAT‑ACAAAT‑TTTAAAAATa                                                                                                                                     >  2:1171120/1‑140 (MQ=255)
     gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGCGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑AATT‑AAT‑ACAAAA‑TTGaaaaaaa                                                                                                                                     >  2:571904/1‑138 (MQ=255)
       tGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTTAAAAATACg                                                                                                                                   >  2:2641599/1‑140 (MQ=255)
           agaccgtGCTGAATCGGTG‑CTGAGGGGGTAATTTTTTAATTTTATACCGATTGAAACAAAGTAAAAAAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGaa                                                                                                                               <  1:770031/134‑1 (MQ=255)
           aCGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑AAT‑AAAAAT‑TTTAAAAATAAGGGaa                                                                                                                               >  2:1758167/1‑140 (MQ=255)
           aCGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AAAT‑ACT‑ACAAAT‑TTTGAAAATACGGGaa                                                                                                                               >  2:1784573/1‑140 (MQ=255)
               cTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTT‑AATT‑ACT‑AAAAAA‑TTTAAAAATAAGGGaaaaaa                                                                                                                           >  2:1304103/1‑139 (MQ=255)
               cTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑AATT‑ACT‑AAAAAT‑TTTAAAAATACGGGaaaaaa                                                                                                                           >  2:3166129/1‑139 (MQ=255)
                       atgggTG‑CAGCGCGGGTAAATTTTTAAATTTATACCGATTTAAAAAAAGTAAAAAAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCAtt                                                                                                                   <  1:123290/137‑1 (MQ=255)
                       atcttgg‑CAGATCTGGTAAATTTTTAAATTTATACCTATTGAAACAAATTAAAACAAA‑AACGCCTGGGAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCAtt                                                                                                                   <  2:1406234/134‑1 (MQ=255)
                       aTCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCAtt                                                                                                                   <  2:2346292/140‑1 (MQ=255)
                        tCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGGTTTTTATTT‑AAAT‑AAT‑ACAAAT‑TTGAAAAATTCGGGAAAAAAATCCCAttt                                                                                                                  >  2:458499/1‑140 (MQ=255)
                           gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGT‑AAAT‑AAA‑AAAAAA‑TTTAAAAAAAAGGGAAAAAAATACCATTTaaa                                                                                                               >  2:665243/1‑138 (MQ=255)
                           gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑AATT‑ACT‑ACAAAT‑TTTTAAAATAAGGGGAAAACATAACATTTaat                                                                                                               >  2:1539175/1‑138 (MQ=255)
                           gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑TATT‑AAT‑ACAAAT‑TTTTAAAATTCGGGAAAAAACTCCCAttttat                                                                                                               >  2:3260119/1‑137 (MQ=255)
                           gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑ACT‑ACACAT‑TTTAAAAATAAGGGAAAAACATACCCGTTACt                                                                                                               >  2:2859944/1‑140 (MQ=255)
                            tG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTT‑AATT‑ACT‑AAAAAA‑TTTAAAAATAAGGGAAAAAAATACCaactgtct                                                                                                              >  2:770031/1‑133 (MQ=255)
                            tG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTGTTTTCTTTTTTGTGTGATTT‑AAA‑AAAAAT‑TTTAAAAATAC‑GGCAAAACATCCCagattctt                                                                                                              >  1:2619213/1‑133 (MQ=255)
                                      gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTGTTGTTGTTTTTTATGT‑AATT‑AAT‑ACAAAT‑TTGTAAAATACGGGAAAAACATCACAATTAATTAAAAAatat                                                                                                     >  2:1892256/1‑140 (MQ=255)
                                       ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTTTTT‑TATTAAAA‑AAAAAT‑TTTAAAAAAAGGGGAAAAA‑ATACCAGTTAATTCCaaaaaagt                                                                                                    >  1:1611009/1‑136 (MQ=255)
                                       ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTGT‑TATT‑AATCAAAAAT‑TTTAAAAAAAC‑GGACAAAAATACCATTTAATTGCAAAAGAtt                                                                                                    >  1:213745/1‑140 (MQ=255)
                                       ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑ACT‑AAAAAA‑TTTAAAAAAACGGGAAAAACATACCATTTACTTACAAAATAtt                                                                                                    >  2:1619891/1‑140 (MQ=255)
                                       ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATGT‑AATT‑AGT‑ACAAAT‑TTGATAAATACGGGAAAAACTTCACAGTTTGTTCCAAACTAtt                                                                                                    >  2:3314807/1‑140 (MQ=255)
                                       ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTGTTGGTGTTTTTTTTTT‑TATT‑AAT‑TCAAAA‑TTTTAAAATAAGGGCAAAAAATCCCAATTTCATAGAAAATAtt                                                                                                    >  1:3004476/1‑140 (MQ=255)
                                       ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGTTTTGTTGTTTTTTAAGT‑AATT‑AAT‑ACAAAA‑TTTAAAAAAAATGGAAAAACATACCATTTAATTCCAAAATAtt                                                                                                    >  2:2248718/1‑140 (MQ=255)
                                             ttttAAATTTATACCGATTGAAACAATGTAAAACAAA‑CCCGGCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑TCAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                              <  2:2685522/140‑1 (MQ=255)
                                             ttttAAATGTAGCCCGATTGAAACAACGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAA‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                              <  2:1348795/140‑1 (MQ=255)
                                              tttAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGt                                                                                             <  1:2447216/140‑1 (MQ=255)
                                                       ataCCTATTTACACAAA‑CAACACAAACAACGCCTGGGAAACCGCGCGTTTATTTGTTCTTTTTTATGT‑CATT‑ACC‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTGGATGGTAATTTTATg                                                                                    <  1:446841/140‑1 (MQ=255)
                                                       aaaCCGATTCAAACAAACTAAAACAAA‑CCCGCCAGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATGTGATGGTAATTTTATg                                                                                    <  1:43194/138‑1 (MQ=255)
                                                            gATTTAAACAACGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                               <  1:3101051/140‑1 (MQ=255)
                                                            gATTGAAACAAAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                               <  1:1088082/140‑1 (MQ=255)
                                                            gATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                               <  1:293342/140‑1 (MQ=255)
                                                            gATTGAAAAAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                               <  1:2659325/140‑1 (MQ=255)
                                                             aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTTTTTTTTTTGT‑AATT‑AAA‑AAAAAA‑TTTTAAAATAAGGGAAAAAAAAACCCATTAATTGCAAAAAATTTTATGGTAATTTTATGTAgtga                                                                              >  2:933301/1‑137 (MQ=255)
                                                             aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑AATT‑AAT‑AAAAAT‑TTTAAAAATAAGGGAAAAACATACCATTTACTTCCAAAAGTTTTGTTTGTAATTTTATGTAGGtt                                                                              >  2:2730686/1‑139 (MQ=255)
                                                             aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑TATT‑ACT‑ACAAAA‑TTTAAAAATAAGGGAAAAAAATCCGATTTAATTACAAAATAATTTATTGTAATTTTTTTTGGGTa                                                                              >  2:1802371/1‑140 (MQ=255)
                                                             aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGTGTTTTTTTTGT‑TATT‑AAT‑AAAAAA‑TTTTAAAATAAGGGGAAAAAAACAAAGTTAATTTGAAAAAATTTTTTGGTAATTTTATTTTGGtt                                                                              >  1:122849/1‑139 (MQ=255)
                                                             aTTGAAACAAAGAAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                                                              <  1:508713/140‑1 (MQ=255)
                                                                 aaacaaacAAAAACAAC‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                                          <  1:1758167/140‑1 (MQ=255)
                                                                 aaaCAAAGAAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                                          <  1:905738/140‑1 (MQ=255)
                                                                       aGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATTT‑AAAT‑AAA‑AAAAAA‑TTTAAAAATAACGGAAAAAAAAACCATTTAATTACAAAAAATTTGATGGTAAATTTATGTATGTAAAATTTTTAt                                                                    >  2:1308075/1‑140 (MQ=255)
                                                                           acaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:1065048/138‑1 (MQ=255)
                                                                           aaccAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACG‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACGTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:2682348/137‑1 (MQ=255)
                                                                           aaacaaa‑cCCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑GTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:221491/140‑1 (MQ=255)
                                                                           aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:1305752/140‑1 (MQ=255)
                                                                           aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:552292/140‑1 (MQ=255)
                                                                           aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:296061/140‑1 (MQ=255)
                                                                           aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:433422/140‑1 (MQ=255)
                                                                           aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:3166129/140‑1 (MQ=255)
                                                                           aaaaaaa‑aACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAACTATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:1306122/140‑1 (MQ=255)
                                                                           aaaCACA‑ACCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AAGT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:2100770/140‑1 (MQ=255)
                                                                           aaaCACA‑AACGCCTGGGAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:1856888/140‑1 (MQ=255)
                                                                           aaaCACA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:1742119/140‑1 (MQ=255)
                                                                           aaaCAAC‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:3127785/140‑1 (MQ=255)
                                                                           aaaCAAA‑ACCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTTAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:497499/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAACCCGGGCGTTTTTTTGTTCTTTTTTATGT‑AAGT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:2239407/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATTT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:377883/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:503242/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:439524/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:1445728/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:1462138/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:669826/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  1:10587/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:2250360/140‑1 (MQ=255)
                                                                           aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACG‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                                <  2:2289731/140‑1 (MQ=255)
                                                                            aaCAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTGT‑AAAT‑AAT‑ACAAAT‑TTTAAAAATACGGGAAAAAAAAACCAATTAAGTGCAAAATATTTTATTGTAATTTTATGTTGGTAAAATTTGTttttttg                                                               >  2:1742119/1‑137 (MQ=255)
                                                                            aaCAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGTGTTTTTTATGT‑AATT‑ACT‑AAAAAA‑TTGAAAAATACTGGAAAAACCTAGCATTTAGGTACACAAGATTTGATTGTAAATTTATGTTGGTATAATTTGGTTTTGGc                                                               >  2:3149479/1‑140 (MQ=255)
                                                                                 accaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATG‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAACTATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                                           <  1:3025115/137‑1 (MQ=255)
                                                                                 aacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                                           <  1:2239529/137‑1 (MQ=255)
                                                                                 a‑aaCGCCTGGGAAACCGGGCGTGTTTTTGGTATTTTTTTAGT‑AATT‑ACT‑ACAAATATTTAAAATTAGGGCAAAAAATACCCATTTA‑TTACAAAATATTTTGTTGTTATTTTTTGTAGGTGAAAATTGTAGTTTGGCGttg                                                          >  2:69759/1‑139 (MQ=255)
                                                                                    aCGCCTGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                                                        <  2:776930/140‑1 (MQ=255)
                                                                                    aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                                                        <  2:853036/140‑1 (MQ=255)
                                                                                    aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                                                        <  2:887961/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  1:933301/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  2:2002022/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  2:141368/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  2:3004476/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  2:2619213/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  2:1510448/140‑1 (MQ=255)
                                                                                      gCCTGGGAAACCGGGAGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                                      <  1:2248718/140‑1 (MQ=255)
                                                                                           ggAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                                                 <  1:2495026/140‑1 (MQ=255)
                                                                                                     cGTTTTTTTGTTCTTTTTTCTGT‑AATG‑ACT‑ACAAAT‑TTCAAAAATACGGGAAAAACATGCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCGGTTCAGAGGAGGTGAAAAGCggg                                       <  1:2461434/140‑1 (MQ=255)
                                                                                                     cGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                                       <  1:1308075/140‑1 (MQ=255)
                                                                                                     cGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                                       <  2:2965009/140‑1 (MQ=255)
                                                                                                     agTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑GTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                                       <  2:923258/139‑1 (MQ=255)
                                                                                                               ttCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTTAAAAATAAGGGAAAAAAATACCATTTACTTCCAAAAAATTTGATGGTAATTTTAATTAGGTAAAATTTGTATTTGGCCGTTAAGAGGCTGTGAAAAGCGGTCAGGCATGaa                             >  2:113789/1‑140 (MQ=255)
                                                                                                                                  act‑acAAAT‑TTGAAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACttttt            <  1:271276/140‑1 (MQ=255)
                                                                                                                                   acgacAAAT‑TTCAAAAATACGGGAAAAACATCACATTTACTTCCAAAATATATGATGGTAATTTTATGTAGCGAAAATGTGTCTTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATCTTTTTATAACttttt            <  1:244323/137‑1 (MQ=255)
                                                                                                                                        aaaT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAgggg       <  2:2547668/140‑1 (MQ=255)
                                                                                                                                        aaaT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCAGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAgggg       <  2:1634479/140‑1 (MQ=255)
                                                                                                                                              tGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAGGGGGAAtt  >  2:2182298/1‑140 (MQ=255)
                                                                                                                                               |                                                                                                                                          
GATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAGGGGGAATT  >  NZ_CP034943/2991125‑2991400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑