Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349433,394,3670CG25.5% 457.1 / 28.3 226G178A (GGA→GCA) ppaXpyrophosphatase PpaX
Reads supporting (aligned to +/- strand):  ref base C (47/105);  new base G (52/0);  total (121/105)
Fisher's exact test for biased strand distribution p-value = 3.57e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 227 total aligned reads displayed.

CGATCTGTTTTTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCA  >  NZ_CP034943/3394229‑3394498
                                                                                                                                          |                                                                                                                                   
 gATCTGTTTTTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACg                                                                                                                                   >  2:440812/1‑140 (MQ=255)
   tCTGTTTTTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGc                                                                                                                                 >  1:2914735/1‑140 (MQ=255)
          ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                          <  2:3262537/140‑1 (MQ=255)
          ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                          <  2:1950159/140‑1 (MQ=255)
          ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                          <  2:1346513/140‑1 (MQ=255)
            ctcACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTacc                                                                                                                        >  1:957214/1‑140 (MQ=255)
                   aTTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGc                                                                                                                 <  1:98981/140‑1 (MQ=255)
                       cgtCACTCCAACGATTTGTAATAGATCACTCATTTTCGCAAGCATATACTCAGGCTCATGCTTTGCCAGTGGTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGGTCCGGCGTTTTTCCCTGCCAGCACAt                                                                                                             <  2:3110798/138‑1 (MQ=255)
                       cTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACAt                                                                                                             <  2:1082796/140‑1 (MQ=255)
                           aCTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTg                                                                                                         <  2:1638128/140‑1 (MQ=255)
                             tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATTCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTACGGCGTTTTTGCCTGACCGCCCATCGGGGt                                                                                                       >  1:1998785/1‑140 (MQ=255)
                             tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCCTGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGcccaaccaggg                                                                                                       >  2:3007826/1‑133 (MQ=255)
                             tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACGGCGTTTTTAACAGCCAGCACAACGTGGt                                                                                                       >  1:2354420/1‑140 (MQ=255)
                             tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTACGGCGTTTTTCCCTGCCAGCACATccttgt                                                                                                       >  2:2258674/1‑135 (MQ=255)
                               cAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTCCGGGGTTTTTGCCTGCCCGCACCACCTGGTaa                                                                                                     >  1:1833605/1‑140 (MQ=255)
                               cAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACGGCGTTTTTGCCTGCCCCCACATCGTGGTaa                                                                                                     >  1:2024762/1‑140 (MQ=255)
                               cAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTTCGGGGTGTTTGCCGGCCAGCACAACGTGGTaa                                                                                                     >  1:1474355/1‑140 (MQ=255)
                                 aCGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTCCCAGCCAGCACCTCGTTGTaagt                                                                                                   >  2:890664/1‑138 (MQ=255)
                                     tttGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTAtct                                                                                               <  2:1668968/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCCAGCATATAATCAGGCTCATGGTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:2333742/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCGCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:3007826/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:81681/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:563541/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:413221/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:170998/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  2:1723382/140‑1 (MQ=255)
                                       tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTcc                                                                                             <  1:112799/140‑1 (MQ=255)
                                       agTAATAGATCACTCATTTTCTCAAGCATATAATCAGGATCATGCTTTGCCAGTGTTTCCGGACATTTAATCGTCCATGCGACACCGGCCGTTTTTTTTCCGGCCGTTTTCACGGCCACCACATCGTGGTAATTAtatgc                                                                                             >  2:19798/2‑136 (MQ=255)
                                              gATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTCCCTGCCAGCACAACGTGGTAATTATATACGACCCTa                                                                                      >  2:278085/1‑140 (MQ=255)
                                               aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTGCCGGCCAGCACAAAGTGGTAATTATCTCCGACCATaa                                                                                     >  1:2105439/1‑140 (MQ=255)
                                               aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTCCGGCGTTTTTACCAGCCAGCACAACGTGGTAATTATAAACGACCATaa                                                                                     >  2:2633533/1‑140 (MQ=255)
                                               aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTGCCTGCCAGCAACAAGTTGTAATTATCTCCGACAATaa                                                                                     >  1:1953403/1‑140 (MQ=255)
                                               aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTCCCTGCCAGCACAAGGTGGTAATTATCTCCGACCATaa                                                                                     >  2:2904694/1‑140 (MQ=255)
                                               aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTACCGCGTTTTTGCCTGCCAGCACATCGGGGTAATTAAAACCGACCaaaa                                                                                     >  1:2492150/1‑140 (MQ=255)
                                               aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTACGGCGTTTTTTCCGGCCACCCCAACCTGGTAATTATATCCGAACAGaa                                                                                     >  1:2792129/1‑140 (MQ=255)
                                                 cACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGGGTTTTTGCCTGCCAGCACATCGTGGTAAGTATATCCGACCATaaag                                                                                   >  1:111238/1‑138 (MQ=255)
                                                 cACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTCCGGCGTTTTTACCAGCCAGCACATAGTGGTAATTATCTCCGACCATAAtt                                                                                   >  2:1701105/1‑139 (MQ=255)
                                                   cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTACTCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGc                                                                                 <  2:1434336/140‑1 (MQ=255)
                                                   cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTACCTGCCAGCACATCGTGGTAATTATCTCCGACCCTAAttgg                                                                                 >  2:3161858/1‑137 (MQ=255)
                                                   cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGGTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGc                                                                                 <  2:2475141/140‑1 (MQ=255)
                                                   cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTACGGGGTTTTTTCCGGCCAGCCCAACGTGGTAATTATCTCCGACCaaaaatgc                                                                                 >  1:1916381/1‑136 (MQ=255)
                                                       ttttCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCCGCGTTTTTTCCTGCCCGCCCATCCGGGTAATTATATCCGACCATAAAGGcgtac                                                                             >  1:2894703/1‑136 (MQ=255)
                                                        tttCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTccg                                                                            <  1:2268866/140‑1 (MQ=255)
                                                              caccATATAATCACGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCt                                                                      <  1:24106/137‑1 (MQ=255)
                                                              aaGCATATAATCAGGCTCCTGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCt                                                                      <  1:3189281/140‑1 (MQ=255)
                                                              aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCAGAATGGCTTCCGCCGGCt                                                                      <  2:1618266/140‑1 (MQ=255)
                                                              aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGGGTTTTTGCCGGGCAGCACAACGTGGTAATTATGTCCGACCAAAATGGCGTACGCCCGCt                                                                      >  1:3240367/1‑140 (MQ=255)
                                                              aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGGGGTTTTGCCGGCCCGCACAGCGGGGGAAATATATACGCCCCAAAAGGCGTCCGCCGGcg                                                                      >  1:1066596/1‑139 (MQ=255)
                                                              aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTGAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCGCCGACCATACTGGCTTCCGCCGGCt                                                                      <  2:3105630/140‑1 (MQ=255)
                                                                gCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCg                                                                    <  2:2914735/140‑1 (MQ=255)
                                                                        tCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGGGTTTTTGCCGGCCAGCACATCGTGGTAATTATCTGCGACCAAAATTGGTTGCGCCGGCTCGCTTGCTAg                                                            >  2:2812285/1‑140 (MQ=255)
                                                                          aGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTCCCTGCCCGCACATCGGGGTAATTATCTCCGACCCTAATTGCGTCCCCCCGCTCGCGTCCTAGCt                                                          >  2:1025865/1‑140 (MQ=255)
                                                                            gCTCATGCTTTGCCAGTGTTTCCGGCCGTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGGGGCGTTTGTGCCTGCGCGCACCTGGTGGTTAGTATGTGCGCCCCTAATGGGTTCGGCCGGCGGGCTTGCGAGCGGt                                                        >  1:457347/1‑140 (MQ=255)
                                                                            gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTGCCTGCCCCCACAACGTGGTAATTAAATGCGACCAAAAAGGGTTGCGCCGGCGCGCGTCCTAGCTGt                                                        >  1:1246168/1‑140 (MQ=255)
                                                                            gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCCACCAAAATAGCTTCCGCCGGCGCGCTTCCTAGCttt                                                        >  2:3026931/1‑138 (MQ=255)
                                                                            gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTCCGGCGTTTTTGCCTGCCAGCACATCGTGGTAAGTATATCCGACCATAAAGGCTTCCCCCCGCTCCCTTCCAACCTGt                                                        >  2:2842257/1‑140 (MQ=255)
                                                                             cTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGtt                                                       >  2:2493521/1‑140 (MQ=255)
                                                                                 tGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGGGGTTTTTCCTGGCCGCACATCGTGGTAATTATATACGCCCCAAATGGCTTCCGCCCGCGCGCGTACTAGCGGTTTAAg                                                   >  1:1608318/1‑140 (MQ=255)
                                                                                 tGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACCGCGTTTTTACCTGCCAGCACATCGTTGTAATTAACTACCACCATAAATGCTTCCCCCGGCGCGCTTCCGAGCTGTTTAAg                                                   >  2:653832/1‑140 (MQ=255)
                                                                                 tGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGGGGCGGTTTTTCCGGGCCGCACAAAGTGGGAAATATATACGTCCAAAAATGGTTACGCCCGCTCGCTTCCGAGCTGTTTCAg                                                   >  1:2823504/1‑140 (MQ=255)
                                                                                      tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTTACAGCCCCCACATCCGGGGAATTATATCCGAACATAAAGGCTTCCGCCCGCGCCCGTCCGAGCGGTTTGAgcgcga                                              >  1:1146687/1‑138 (MQ=255)
                                                                                      tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTACCTGCCAGCCCCTCGTGGTAATTATCTCCGACCAAAATTGCTTCCGCCGGCTCGCTTCCTAGCGGTTTAAgcgcga                                              >  2:2591871/1‑138 (MQ=255)
                                                                                      tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGGTTTTTCCTGCCCCCACCACGGGGGAATTTTCTGCGTCCAGAATGGCGTGCGCCCGCGCGCGGCCGAGCTGTTTCAgcgcga                                              >  1:794837/1‑138 (MQ=255)
                                                                                      tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGGGTTTTCCTGCCCCCCCAACGGGGGTATTATATCCCGCCCAAATGGGTTCCCCCGGGGCGCTTGCGATCGGTTTGAgcccga                                              >  1:926034/1‑136 (MQ=255)
                                                                                       gCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTaa                                             <  1:2497011/140‑1 (MQ=255)
                                                                                       gCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTaa                                             <  1:2749075/140‑1 (MQ=255)
                                                                                            tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                        <  2:2294383/140‑1 (MQ=255)
                                                                                            tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                        <  2:2416517/140‑1 (MQ=255)
                                                                                            tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                        <  1:2633533/140‑1 (MQ=255)
                                                                                             gtgtCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTACAGCGCTAAAAGcac                                       <  1:653832/137‑1 (MQ=255)
                                                                                              tttCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCGAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGcaca                                      <  2:175673/140‑1 (MQ=255)
                                                                                              tttCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACAACGTGGTAATTATCACCGACCATAATTGCTTCCGCCGGCTCGCGTACTACCTGTTTCAGCGCTAAAAGcaca                                      >  2:3374123/1‑140 (MQ=255)
                                                                                                  cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTTTCTGTTTCAGCGCTACAAGCAGAGTCt                                  <  2:1537387/140‑1 (MQ=255)
                                                                                                  cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                  <  1:3155908/140‑1 (MQ=255)
                                                                                                        tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                            <  2:2383792/140‑1 (MQ=255)
                                                                                                        tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                            <  2:1170633/140‑1 (MQ=255)
                                                                                                          tAATCGTCCATGCGACTCCGGCCGTTTTTTTTCCGGCGTTTTTGCCTGCCACCCCAACGTGGTAATTTTCTGGCCCCCAAAAGGCGTCCGCCCCCTCGCTTCCTATCGCGTTCTCCGCTAAAATACCACGCGCGGGAtaa                          >  2:2948114/1‑138 (MQ=255)
                                                                                                              cGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCt                      <  1:2948111/140‑1 (MQ=255)
                                                                                                              cGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCt                      <  2:3228958/140‑1 (MQ=255)
                                                                                                              cGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCt                      <  2:794837/140‑1 (MQ=255)
                                                                                                                tCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTCCCGGCCCGCACAACGTGGTAATTATAAACGCCCAAAATGTCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCGAAAAACACAGCCTCGGGCTCAGGCttt                    >  2:2806979/1‑140 (MQ=255)
                                                                                                                  cATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTGCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATTGCTTACGCCGGCTCGCTTCCTAGCGGTTTCAGCGCTAAAAGCACAGGCTCGGGATAAGGGTTTGc                  >  2:3274265/1‑140 (MQ=255)
                                                                                                                  cATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCAGCCAGCACATCGTGGTAATTATAACCGACCATAATTGCTTCCGCCGGCTCGCTTCCGAGCTGTTTCAGCGCTAAAATCACAAGCTCGGGATCACGCttttc                  >  2:618501/1‑138 (MQ=255)
                                                                                                                  cATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTACCTGCCCGCACAACGTGGTAATTATATCCGACCATAAAGGCTTACCCCCGCTCGCGTCCAAGCTGTTTAAGCGCTAAAAGCACACGCTCCGGATCAGGCTGTGc                  >  2:3216536/1‑140 (MQ=255)
                                                                                                                   aTGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGcc                 <  2:1248931/140‑1 (MQ=255)
                                                                                                                   aTGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGcc                 <  1:2807048/140‑1 (MQ=255)
                                                                                                                    tGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTGCCTGGCACCCCATCGTGGTAATTATATCCGACCCTAATTGCTTCCGCCGGCTCGCGTCCTAGCTGTTTAAGCGCTAAAAACACACGCTCGGGGTCAGGCTTTGCCa                >  2:2063499/1‑140 (MQ=255)
                                                                                                                     gCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAAGTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCAt               <  2:2141516/140‑1 (MQ=255)
                                                                                                                        aCTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGt            <  1:1649047/140‑1 (MQ=255)
                                                                                                                           ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac         <  1:695487/140‑1 (MQ=255)
                                                                                                                           ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac         <  1:2196779/140‑1 (MQ=255)
                                                                                                                            cGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATCATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcaca        <  2:848770/140‑1 (MQ=255)
                                                                                                                            cGGCCGTGTTTGTTCCGGCGGTTTTGCCTGCCCCCACATCGTGGTCATTATCTCCGACCATAATGGCTTCCCCCCGCTCGCGTCCTAGCGGTTTCAGCGCTAAAAACACAGGCTCGGGAGCAGGCGTTTCCCTCGTccca        >  2:1122225/1‑140 (MQ=255)
                                                                                                                              gCCGTTTTTTTTGCGGCGTTTTTACCTGGCCGCACATCGTGGTAATTATATCCGACCATAATGGCTTCCGCCGGCTCGCTTACTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCAcatc      >  2:3348578/1‑140 (MQ=255)
                                                                                                                                  tttttGTTCCGGCGTTTTTCGCTGCCATGAGATGGTGGTATTTATCTCCGACCATAATGTCTTCCTCCGTATCGCTTCCTAGCTGTTTCTGCGCTAATAGGACTGGATCGTGATCAGGCTTTGCAATCGTCACAtcatca  <  1:19798/140‑1 (MQ=255)
                                                                                                                                  tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca  <  1:751508/140‑1 (MQ=255)
                                                                                                                                  tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca  <  2:700768/140‑1 (MQ=255)
                                                                                                                                  tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca  <  1:2467869/140‑1 (MQ=255)
                                                                                                                                  tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca  <  1:2686371/140‑1 (MQ=255)
                                                                                                                                  tttttGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca  <  1:3202055/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                   
CGATCTGTTTTTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAGCACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCA  >  NZ_CP034943/3394229‑3394498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑