BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 165756	262 (1.170)	4 (0.020)	4/224	9.3	1.5%	noncoding (65/73 nt)	EO946_RS00965	tRNA‑Thr
*	?	NZ_CP034943	166185 =	300 (1.620)	4 (0.020)	4/224	9.3	1.5%	noncoding (66/76 nt)	EO946_RS00985	tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 356 total aligned reads displayed.

CTCAGCTTGGTAGAGCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATT  >  NZ_CP034943/166046‑166322

cTCAGCTTGGTAGAGCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTa                                                                                                                                           >  2:526170/1‑140 (MQ=32)

    gCTTGGTAGAGCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCt                                                                                                                                       >  2:281565/1‑140 (MQ=32)

             agCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCaaaa                                                                                                                              >  1:850089/1‑140 (MQ=32)

             agCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCaaaa                                                                                                                              >  1:2104283/1‑140 (MQ=32)

               cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                            >  2:3071817/1‑140 (MQ=33)

               cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                            >  1:2879757/1‑140 (MQ=33)

                  aTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAttttt                                                                                                                         >  1:2687927/1‑140 (MQ=34)

                      tttGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGTAGGTCATCTGTTCGAGCCCGCTAGGCTTCACAAATATTTTTaaaa                                                                                                                     <  2:1136630/140‑1 (MQ=11)

                        tGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaaaaaa                                                                                                                   >  1:1733368/1‑140 (MQ=39)

                         gggACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAg                                                                                                                  >  1:2256259/1‑140 (MQ=39)

                              cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                             >  1:648903/1‑140 (MQ=39)

                              cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                             >  1:1661482/1‑140 (MQ=39)

                              cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                             <  2:295217/140‑1 (MQ=39)

                               aTGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCCAAATTTTTAAAAAAGttgttg                                                                                                            >  1:1762955/1‑140 (MQ=255)

                               aTGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGttgttg                                                                                                            >  1:294968/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  2:1027321/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  1:510539/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  2:1409051/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  1:902408/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  1:3299344/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  2:2360022/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  1:232193/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  2:2581067/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  2:2971626/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                           >  1:1032996/1‑140 (MQ=39)

                                tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCGCCACCAAAATTGTTAAAAAAGTGGTTGa                                                                                                           >  2:2020836/1‑140 (MQ=255)

                                     tCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTg                                                                                                      >  1:713262/1‑140 (MQ=40)

                                             tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAATTTTTTAATAAAGTTGTTGACTTTGAAGAagca                                                                                              <  2:2728577/140‑1 (MQ=255)

                                             tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  1:2514828/140‑1 (MQ=255)

                                             tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  2:1762955/140‑1 (MQ=255)

                                             tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  1:1531421/140‑1 (MQ=255)

                                             tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  2:2999153/140‑1 (MQ=255)

                                             tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  1:1154712/140‑1 (MQ=255)

                                             tCGAATCCTGTCGTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  2:2696236/140‑1 (MQ=255)

                                                aaTCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCg                                                                                           <  2:583121/140‑1 (MQ=255)

                                                   ccTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTg                                                                                        <  2:962520/140‑1 (MQ=255)

                                                     tGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      >  1:2781177/1‑140 (MQ=255)

                                                     tGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      <  1:496835/140‑1 (MQ=255)

                                                     tGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      <  1:952531/140‑1 (MQ=255)

                                                     tGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      <  1:774090/140‑1 (MQ=255)

                                                       tCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGCGAGCGCCTGCTTTGCGCGCAGGAGGTCAGCGGTGCGAGGCCGCTAGGCTCCACCAAAATGTTTAAAAAAGTTGGTGCCGTTGGAGAAGCAGCGtgggctg                                                                                    >  2:865406/1‑134 (MQ=14)

                                                       tCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGtata                                                                                    >  1:3050060/1‑140 (MQ=255)

                                                       tCTTCCCGACCATTTTCATGGGGCCTTAGCGCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGtata                                                                                    >  2:3370763/1‑140 (MQ=255)

                                                           cccGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACtaa                                                                                >  2:2858096/1‑140 (MQ=255)

                                                               aCCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      <  2:1284329/130‑1 (MQ=255)

                                                               aCCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      >  1:1284329/1‑130 (MQ=255)

                                                               aCCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATaaa                                                                            <  2:1208271/140‑1 (MQ=255)

                                                               aCCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATaaa                                                                            >  2:1681209/1‑140 (MQ=255)

                                                                 cATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                          >  1:185579/1‑140 (MQ=255)

                                                                   ttttCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTg                                                                                        <  2:1237301/124‑1 (MQ=255)

                                                                              ccTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATAGTAATAAAGTTGCTTTAACAAAg                                                             >  2:1796323/1‑140 (MQ=255)

                                                                               cTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGc                                                            >  2:2112682/1‑140 (MQ=255)

                                                                               cTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGc                                                            >  2:626035/1‑140 (MQ=255)

                                                                                 tAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGa                                                          >  2:785495/1‑140 (MQ=255)

                                                                                      cAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATaaa                                                     >  1:30860/1‑140 (MQ=255)

                                                                                      cAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATaaa                                                     >  1:2210331/1‑140 (MQ=255)

                                                                                       aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCTGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAAc                                                    >  1:3173902/1‑140 (MQ=255)

                                                                                       aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAAc                                                    >  2:2331953/1‑140 (MQ=255)

                                                                                       aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAAc                                                    >  1:133389/1‑140 (MQ=255)

                                                                                       aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAAc                                                    >  2:379168/1‑140 (MQ=255)

                                                                                       aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAAc                                                    >  2:1630293/1‑140 (MQ=255)

                                                                                        gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCTGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                   >  1:1943652/1‑140 (MQ=255)

                                                                                        gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                   >  2:1916587/1‑140 (MQ=255)

                                                                                        gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                   >  2:646905/1‑140 (MQ=255)

                                                                                         cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGACGAAGCAGCGTTGTATACTCATAAAGTTGCTTTAACAAAGCGAATAAACGa                                                  >  1:2723896/1‑140 (MQ=255)

                                                                                         cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      >  2:34965/1‑104 (MQ=255)

                                                                                         cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                      <  1:34965/104‑1 (MQ=255)

                                                                                                 gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTga                                                                                                     <  2:747640/81‑1 (MQ=255)

                                                                                                 gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                          <  2:1464775/108‑1 (MQ=255)

                                                                                                 gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                          >  1:1464775/1‑108 (MQ=255)

                                                                                                 gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCt                                          >  1:837826/1‑140 (MQ=255)

                                                                                                  cgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCtt                                         >  1:419112/1‑140 (MQ=255)

                                                                                                   gcatGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTATTAAAAAAGTTCTTGACTGTGAAGAAGCAGCGTTCTATACTAAACAAGTTCCTTTAACAAAGCGAATAAACCAAATCATAttt                                        >  2:2927177/4‑140 (MQ=14)

                                                                                                   gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGTGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATAGTAATAAAGTTGCTTTAACAAAGCGAATAAACGACATGATCttt                                        >  2:2195363/1‑140 (MQ=255)

                                                                                                   gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAACTGATCttt                                        >  1:2411946/1‑140 (MQ=255)

                                                                                                   gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCttt                                        <  1:2558645/140‑1 (MQ=255)

                                                                                                   gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCttt                                        <  1:63093/140‑1 (MQ=255)

                                                                                                   gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCttt                                        >  1:2059941/1‑140 (MQ=255)

                                                                                                   gcCTGCTTTGCACGCAGGAGGTCAGCGCTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAATGTTGTTGACTTTGAAGAAGCAGCGTTGTATGCTAATAAAGTTGCTTTAACACAGCGAATAAACGAAATGATCttt                                        >  1:2141972/1‑140 (MQ=255)

                                                                                                   gcCTGCTTCGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCttt                                        <  2:2261085/140‑1 (MQ=255)

                                                                                                    ccTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTg                                       >  2:1054432/1‑140 (MQ=255)

                                                                                                       gCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGaaa                                    >  2:2435151/1‑140 (MQ=255)

                                                                                                       gCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATATTTGaaa                                    >  2:3274817/1‑140 (MQ=255)

                                                                                                           tGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  2:3367148/78‑1 (MQ=255)

                                                                                                             cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                              <  1:1072528/140‑1 (MQ=255)

                                                                                                               aggaagaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAGAGTTGTTGACTGTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACa                            >  2:214171/6‑140 (MQ=255)

                                                                                                                  aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagcag                                                                                             >  2:69415/1‑72 (MQ=255)

                                                                                                                  aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                         >  1:1195303/1‑140 (MQ=255)

                                                                                                                       gTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACaaaa                    >  1:2077645/1‑140 (MQ=255)

                                                                                                                        tCAGCGGTTCGATCCCGCTAGGATCCACCAAATTTTTTAAAAAAGTTGTTTACTTTGAAGAAGCAGGGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATATTTGAAAACTAAACAAGACAAAAc                   <  2:844495/140‑1 (MQ=11)

                                                                                                                         cAGCGGTTCGAGCCCTCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACg                  <  2:1943652/140‑1 (MQ=255)

                                                                                                                          aGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                              <  2:2549559/63‑1 (MQ=255)

                                                                                                                          aGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGt                 >  2:208194/1‑140 (MQ=255)

                                                                                                                            cGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTAc               >  2:2485549/1‑140 (MQ=255)

                                                                                                                               ttCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTCATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGAGCTGTGAAAACTAAACAAGACAAATCGTACCTg            >  1:299393/1‑140 (MQ=255)

                                                                                                                                 cGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACaaa                                                              >  1:2470207/1‑88 (MQ=255)

                                                                                                                                     cccGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAtt      <  1:3376083/140‑1 (MQ=255)

                                                                                                                                         cTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCg                                                                                           >  1:2817520/1‑51 (MQ=255)

                                                                                                                                         cTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGaaaa                                   <  2:1567914/107‑1 (MQ=255)

                                                                                                                                         cTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGaaaa                                   <  2:3201435/107‑1 (MQ=255)

CTCAGCTTGGTAGAGCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATT  >  NZ_CP034943/166046‑166322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.