Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349433,446,9700GT27.0% 336.6 / 59.0 205Q206K (CAA→AAA) degUtwo‑component system response regulator DegU
Reads supporting (aligned to +/- strand):  ref base G (55/94);  new base T (55/0);  total (111/94)
Fisher's exact test for biased strand distribution p-value = 3.76e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 208 total aligned reads displayed.

CTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCG  >  NZ_CP034943/3446831‑3447108
                                                                                                                                           |                                                                                                                                          
ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTg                                                                                                                                            >  2:2167993/1‑140 (MQ=255)
ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTg                                                                                                                                            >  1:2079070/1‑140 (MQ=255)
    tGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCaaa                                                                                                                                        <  1:906272/140‑1 (MQ=255)
        aGGGAAACGGCAGCCTAAACAAAGACCTGCCCAGTAAAAGGCCAGTCTCTTATTCTCCTATCTCATGTCGACCCAGCCATTTTTAATGGCGACCACCACGGCTTGCGTCGGGTCGTTTACATTCATTTTTTGCTAAatat                                                                                                                                    <  2:2345733/140‑1 (MQ=255)
        aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCATTAATTTTTTTCAAAatat                                                                                                                                    >  1:364780/1‑140 (MQ=255)
        aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAatat                                                                                                                                    <  1:2203258/140‑1 (MQ=255)
        aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAatat                                                                                                                                    >  1:632983/1‑140 (MQ=255)
        aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAAATTTTTTCAAAaaat                                                                                                                                    >  1:2375805/1‑140 (MQ=255)
        aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCAATTTTTGAAAAaaat                                                                                                                                    >  1:1598020/1‑140 (MQ=255)
             aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAAATTTTTTCAAAATATTtctc                                                                                                                               >  1:2652723/1‑140 (MQ=255)
                ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTcaca                                                                                                                            <  2:618050/140‑1 (MQ=255)
                ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTcaca                                                                                                                            >  2:1231929/1‑140 (MQ=255)
                ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTcaca                                                                                                                            >  2:1605139/1‑140 (MQ=255)
                  cAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATg                                                                                                                          <  2:607278/140‑1 (MQ=255)
                   aGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATgg                                                                                                                         <  2:1636361/140‑1 (MQ=255)
                   aGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATgg                                                                                                                         <  2:1268505/140‑1 (MQ=255)
                     ccTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTCATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTTCAAAATATTGCTCACAGGGtt                                                                                                                       >  2:2869397/1‑140 (MQ=255)
                     ccTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTAATTTTTTTGAAAATATTTCTGACAAGGtt                                                                                                                       >  1:360940/1‑140 (MQ=255)
                           aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc                                                                                                                 <  1:2988125/140‑1 (MQ=255)
                           aaaaGACCTGCCAAGTAAAAGGCAAGTCTCTTATTATACTATCTAATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc                                                                                                                 <  2:420351/140‑1 (MQ=255)
                             aaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACACCGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACgg                                                                                                               <  2:2682535/140‑1 (MQ=255)
                             aaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACgg                                                                                                               <  2:1111152/140‑1 (MQ=255)
                               gACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTTCACACATTGTTTTTAACgggt                                                                                                             >  1:158908/1‑138 (MQ=255)
                               gACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATTGTTTTTCACGGtt                                                                                                             >  2:1858784/1‑140 (MQ=255)
                               gACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTGCATTCCTTTTTTTGAAAATATTGGTGCCATGGGTTTTGACgggt                                                                                                             >  1:1956574/1‑138 (MQ=255)
                                     cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa                                                                                                       <  1:1466174/140‑1 (MQ=255)
                                     cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAACGGTTTTCTCa                                                                                                       >  2:1910628/1‑140 (MQ=255)
                                     cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTGAATTTTTTGAAAATATTTCTAACATGGGTTTTCACGGttttgtaa                                                                                                       >  1:1133927/1‑136 (MQ=255)
                                          tAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAt                                                                                                  <  1:1385793/140‑1 (MQ=255)
                                                 gagacagctTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAt                                                                                           <  2:3168652/133‑1 (MQ=255)
                                                 cAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAt                                                                                           <  1:767975/140‑1 (MQ=255)
                                                 cAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAt                                                                                           <  2:686742/140‑1 (MQ=255)
                                                   aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa                                                                                         <  2:2079070/140‑1 (MQ=255)
                                                   aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa                                                                                         <  2:2053448/140‑1 (MQ=255)
                                                   aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa                                                                                         <  1:2603963/140‑1 (MQ=255)
                                                   aGTCTCATATTATAATATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa                                                                                         <  2:1041398/140‑1 (MQ=255)
                                                    gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCAATAATTTTTTTCAAAAAAATTCTCACATGGTTTTTAACGGTTTTCTCAATGATAAACAAtttt                                                                                        >  1:23405/1‑137 (MQ=255)
                                                    gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTAATTTTTTTCAAAATATTGCTCACATGGTTTTTAAACGGTTTCTAACTTTTAAAAAAAGAt                                                                                        >  1:1656987/1‑140 (MQ=255)
                                                    gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATAATTTTTTTCAAAATATTTCTCACATGGTTTTTAACGGTTTTATAACATATaaaaaaatat                                                                                        >  2:2611336/1‑136 (MQ=255)
                                                    gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCAATTTTTTCAAAATATTTCTCACAAGGTTTTTAACCGTTTTATCAATGATAAAAAATTAt                                                                                        >  1:2406878/1‑140 (MQ=255)
                                                    gTCTCGTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTGATTTTTTGCAAAATACTTCTCCCATGGTTTTTGCAGGGTTTCTCACTGGTAAACAATGAt                                                                                        >  1:2398038/1‑140 (MQ=255)
                                                    ctctcTAATTATACTATCTCATTTCTACAAAGCCATTTTAAATCGCGACCACAACCTCTTGCGTCCGGGCGTTTAAATAAAAAATATTCAAAAAAAAGAGCAAATTGTTTTTCACGGGTTTATCAATGATAAACAATGAt                                                                                        >  2:1168685/2‑140 (MQ=255)
                                                          tattatACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGGTAACATGTTTTTTAACGGTTTTATCACTGATAAACAATGATTCAACa                                                                                  >  2:1981429/1‑140 (MQ=255)
                                                                 cTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATAAcgc                                                                           >  2:2392383/1‑140 (MQ=255)
                                                                  tATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCATTCATTTTTTTGAAAAAATTTCTCACATTGTTTTTAACGGTTTTCTCACTGATAAAAAATTATTAACCAAAACcccg                                                                          >  1:1581598/1‑140 (MQ=255)
                                                                   aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAAAGGTTTTATCACTTATAAAAAAAGATTAAAAAATAACGCgg                                                                         >  2:2512474/1‑140 (MQ=255)
                                                                   aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAAATTTTTTCAAAATATTTCTCACAATGTTTTTAACGGTTTTATCACATATAAAAAAATATTGACCAAAAcccagg                                                                         >  1:2853001/1‑136 (MQ=255)
                                                                   aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATCATTTTTTTCAAAAAATTTCTCACATGGTTTTTAAAGGTTTTATCACTTATAAAAAAAGATTAACCAAAAACGCgg                                                                         >  1:3259843/1‑140 (MQ=255)
                                                                   aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATCATTTTTTGCAAAATATTTCTCACATGGTTTTTGACGGTTTTCTCACTGATAAACAATGATTCACCACTACAGCgg                                                                         >  1:2809647/1‑140 (MQ=255)
                                                                   aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTAAATAATTTTTTTGAAAATATTGCTCAAAAGGTTTTTAACGGTTTTCTCAATGATAAAAAAAGATTCACCAAAAACGCgg                                                                         >  1:3068430/1‑140 (MQ=255)
                                                                   aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTTCAAAAAATTTCTCACATGGTTTTTAACGGTTTTCTAAAGGTTAAAAAATGATTAACCAATAACGCgg                                                                         >  1:2547385/1‑140 (MQ=255)
                                                                    tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCATTCATTTTTTGTTAAATATTTCTGACATGGTTTTTTAAGGTTTTGTCACTGATAAAAAATTATTAACCAATACCGCGGt                                                                        >  1:3417285/1‑140 (MQ=255)
                                                                    tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATTGTGTTTCACGGTTTTATAAAATATAAACAATGATTCAACAATAACGCCGt                                                                        >  2:476655/1‑140 (MQ=255)
                                                                    tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCAATTTTTGCAAAAAATTGCTCACATGGTTTTTCACGGTTTTCTAACAGATAAACAAAGATTAAACAAAACAGCGGt                                                                        >  2:977652/1‑140 (MQ=255)
                                                                    tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTTCAAAAAAATTCTCACATGGTTTTTAACGGTTTTATAACTGATAAAAAAATATTAACCAAAAcccccgt                                                                        >  1:2279195/1‑135 (MQ=255)
                                                                     ctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTTATAAAAAATGATTCACCAATACCGCGGtt                                                                       >  2:10761/1‑140 (MQ=255)
                                                                     ctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTGAAAAAATTTCTAACATGGTTTTTAAAGGTTTTGTAACAGATAAAAAATGATTCACCAAAACCGCGGtt                                                                       >  1:293621/1‑140 (MQ=255)
                                                                         tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTTCAAAAAATTGCTCACAAGGTTTTTAACGGTTTTATCACAGATAAAAAAATATTCACCAAAAAAGCgcttgctt                                                                   >  1:2706488/1‑140 (MQ=255)
                                                                          ttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCCATACCGCCGGTGCgtt                                                                  >  2:2981167/1‑140 (MQ=255)
                                                                          ttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTTCAAAATATTGCTCAAAAGGTTTTTAACGGTTTTATCACTGATAAACAATGATTCAACAATACAACGGTTGCttt                                                                  >  2:3104412/1‑140 (MQ=255)
                                                                          ttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCCGTCGTTTAAAATCAATTTTTGCAAAAAATTTCTAACATGTTTTTTAACGGTATTATAACTCTTAAACAATGTTTCAAAAAAACAGCCGTTGCttt                                                                  >  2:2532715/1‑140 (MQ=255)
                                                                              aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCTTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTcc                                                              <  2:1712239/140‑1 (MQ=255)
                                                                              aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCAATCATTTTTTGAAAAATATTGCTCACATGGTTGTTCACGGTTTTGTCACTGTTAAACAATGATTCACAAATAACGCGGTTTCTTTTTcg                                                              >  1:2426174/1‑139 (MQ=255)
                                                                              aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATAAATTTTTTCAAAATATTTCTCACATGGTTTTTAACGGTTTTATAAAATATAAAAAATGATTGAACAAAACCGCGGTTTGtttttac                                                              >  1:1915525/1‑138 (MQ=255)
                                                                              aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCATTCATTTTTTTCAAAAAATTGGGCACAGGGTTTTTAACCGGTTTATCCCTGATTAACAAAGATTAACCAATAACCCGGTGGCtttttgc                                                              >  1:1521003/1‑138 (MQ=255)
                                                                              aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTATACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTcc                                                              >  1:3061387/1‑140 (MQ=255)
                                                                                  aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCa                                                                                                                                          >  1:794855/1‑60 (MQ=255)
                                                                                  aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTTCTCACATGGTTTTTCACGGTTTTGTCACTGTTAAACAATGATTGACCAAAACACCGGTTGCTTTTTGCGGCt                                                          >  1:3279339/1‑140 (MQ=255)
                                                                                  aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCa                                                                                                                                          <  2:794855/60‑1 (MQ=255)
                                                                                  aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCATTTTTTGCAAAAAAATGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACCATGATTCACCAAAACCGCGGTTGCTTTTTCCGTCt                                                          >  2:225937/1‑140 (MQ=255)
                                                                                  aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATTATTCACCAATACCGCGGTTGCTTTTTCCGTCt                                                          >  2:590100/1‑140 (MQ=255)
                                                                                     cATTTTTAATGGCGACCCCACCGGCTTGCGACCGGTCGTTTACAGTCATTTTTTGCAAAATATTGCTCACATGGATTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa                                                       <  1:3308003/140‑1 (MQ=255)
                                                                                     cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa                                                       <  1:44253/140‑1 (MQ=255)
                                                                                     cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCa                                                       <  1:1607526/140‑1 (MQ=255)
                                                                                     cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCa                                                       <  1:2913743/140‑1 (MQ=255)
                                                                                        ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc                                                    <  1:2587540/140‑1 (MQ=255)
                                                                                         tttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAAAATTGCTCACAAGGTTTTTAACGGTTTTCTCACTGATAAACAATTATTAACCAAAAACGCGGGTGCTTTTTACGTCagcaagca                                                   >  2:3372063/1‑140 (MQ=255)
                                                                                         tttAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCATTCATTTTTTTCAAAATATTTCTCACATGGTTTTTGACGGTTTTGTGACTGATAAAAAATTATTGACCCAAAACCCGGTTGGTTTTTGCGTCTGCAAGCa                                                   >  1:1051480/1‑140 (MQ=255)
                                                                                          ttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACCTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCAt                                                  <  2:2420205/140‑1 (MQ=255)
                                                                                                 cGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAAGATTCACCAAAACCGCGGTTGCTTTTTACGTCTGCAAGCATCTgcagc                                           >  2:2399034/1‑140 (MQ=255)
                                                                                                 cGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagc                                           >  2:712768/1‑140 (MQ=255)
                                                                                                  gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCCCGGTTTTCTCACTGATAAACAATGATTCACAAATACCGCCGGTGCTTTTTCCGTCTGCAAGCATCTgcagca                                          <  1:201875/140‑1 (MQ=255)
                                                                                                     cacaACGGCTTGAGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt                                       <  2:2210051/140‑1 (MQ=255)
                                                                                                             cTTGCGTCCGGTCGTTTTCATTCATTTTTTGCAAAAAATTTCGCACATGGTTTTTGACGGTTTTCTCACTGATAAAAAAAGATTCACCCAAAACCCGGTTGGTTTTTGCGTCTGCAAGCAGCTGCAGCACATcacaatac                               >  1:3220188/1‑136 (MQ=255)
                                                                                                               tGCGTCCGGTCGTTTACATTAAATTTTTGCAAAAAATTTCTCACAAGGTTTTTCACGGTTTTGTCACTGATAAAAAAAGATTAACCAAAAACCCGGTTTGGTTTTGCGTCTGCAAACAACTGGAGCACTTAACAATAccg                             >  1:2891034/1‑140 (MQ=255)
                                                                                                                 cGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTGTCTCACTGATAAACAATGATTCACCAAGACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc                           <  2:1532928/140‑1 (MQ=255)
                                                                                                                      ggTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGtt                      <  2:177495/140‑1 (MQ=255)
                                                                                                                         cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa                   <  1:739554/140‑1 (MQ=255)
                                                                                                                         cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa                   <  2:2641333/140‑1 (MQ=255)
                                                                                                                         cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa                   <  1:10761/140‑1 (MQ=255)
                                                                                                                           tttACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat                 <  2:3259843/140‑1 (MQ=255)
                                                                                                                           tttACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat                 <  2:2856291/140‑1 (MQ=255)
                                                                                                                                attcattTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa            <  1:135940/140‑1 (MQ=255)
                                                                                                                                attcattTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa            <  1:2493164/140‑1 (MQ=255)
                                                                                                                                  tcattTTTTTCAAAATATTGCTCACAAGGTTTTTCACGGTTTTCTGACTGATAAACAATGATTCACCAAAACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCCCGGTAAAATATGTAAt          >  1:2284836/1‑140 (MQ=255)
                                                                                                                                    attTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg        >  1:1724112/1‑140 (MQ=255)
                                                                                                                                      tttttGCAAAATATTGCTCACATGGTTGTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCGGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTc      >  1:560536/1‑140 (MQ=255)
                                                                                                                                        tgtGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTg    <  1:2869397/138‑1 (MQ=255)
                                                                                                                                          tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg  <  1:2569798/140‑1 (MQ=255)
                                                                                                                                          tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg  <  1:712768/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                          
CTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCG  >  NZ_CP034943/3446831‑3447108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑