New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 3471153	416 (1.600)	3 (0.010)	3/250	NT	0.72%	coding (683/1905 nt)	EO946_RS17905	glycosyltransferase
	?	NZ_CP034943	3471159 =	410 (1.590)					coding (677/1905 nt)	EO946_RS17905	glycosyltransferase
Rejected: Frequency below/above cutoff threshold.

AATGGCGATTTAAAAACTTCGCCATAAAATTCATTTTGCCGGTATGAGAAAGACGGCTCTCACAAATCATATCTATGATGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3471070‑3471153 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  >  NZ_CP034943/3471159‑3471297                                                                                                                                                                                                                                 AATGGCGATTTAAAAACTTAGACATAAAATTCATTTTGCCGGTATGAGAAAGACGGCTCTCACACATCATATCTATGATGACCTGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATG                                                                                     <  1:1614428/140‑1                                                       GGCTCTCACAAATCATATCTATGATGACCTGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCA                                                                                       <  2:803443/84‑1                                                       GGCTCTCACAAATCATATCTATGATGACCTGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCA                                                                                       >  1:803443/1‑84                                                                                 ACCTGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTC                                     <  1:4189604/108‑1                                                                                 ACCTGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTC                                     >  2:4189604/1‑108                                                                                    TGCACCGTAGTCGCTGTGAGGCGCAACATAAGCAAATGTCACATGCTCGCCGTCATGCTGTACAGCGTAGTAAGAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  2:2578950/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGAGAGAAATTTTGTCCGGTTCTAAATAATCTTTCATGACAAATACCTGAT  <  1:2719792/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  1:2991812/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  1:305996/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  1:326181/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  1:4069480/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  1:4291742/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  2:407831/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  2:4238264/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  2:716722/140‑1                                                                                    TGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  <  1:1124685/140‑1                                                                                    TGCACCGTAGGAGCTTTGAGGCGCAACATAACCAAATGTCATATGCCCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAACTAAGCTTTCATGACAAATACCTGAT  <  1:3039800/140‑1                                                                                    TGCACCGGAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATCAGCTTTCATGACAAATACCTGAT  <  1:2042528/140‑1                                                                                                                                                                                                                                 AATGGCGATTTAAAAACTTCGCCATAAAATTCATTTTGCCGGTATGAGAAAGACGGCTCTCACAAATCATATCTATGATGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3471070‑3471153 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCACCGTAGTAGCTTTGAGGCGCAACATAAGCAAATGTCATATGCTCGCCGTCATGCTGTACAGCGTAGTAATAATCATAGTCGGCCAAGACAGAAATTTTGTCCGCTTCTAAATAAGCTTTCATGACAAATACCTGAT  >  NZ_CP034943/3471159‑3471297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.