| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,262 | C→A | 8.0% | Q28K (CAA→AAA) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,262 | 0 | C | A | 8.0% | 724.3 / 7.4 | 298 | Q28K (CAA→AAA) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base C (173/88); new base A (3/34); total (176/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 302 total aligned reads displayed.
GTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316125‑316401 | gtgGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCaa > 2:3679500/1‑140 (MQ=255)gtgGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCaa > 2:261528/1‑140 (MQ=255) aTGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAACCAAACAAATAAAGCATTTCAAATGCt > 2:766644/1‑140 (MQ=255) ttACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGc > 1:340360/1‑140 (MQ=255) aaGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGACAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACgg > 1:3537585/1‑140 (MQ=255) aaGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACgg > 2:904508/1‑140 (MQ=255) attgtTACGGTTATAAGTATTCTATAATATTGAGGGAAAATATGACTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGa < 2:2459193/138‑1 (MQ=255) actgtTACGGTTATAAGGCTTGTTTAATATTGAGGGAAACTATGAGTGTAGATGAGACACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGa < 2:4031354/138‑1 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGCAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGACAACGGaa > 1:2699294/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGaa > 1:117240/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGaa > 2:3216281/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGaa > 1:96309/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCGTGCCACCGGaa > 2:2870487/1‑140 (MQ=255) gtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAg > 1:3172884/1‑140 (MQ=255) tACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGAc > 2:3948511/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACa > 2:612475/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACa > 1:810974/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTCGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCCACGGAAAGACaaaaaaa > 1:3214745/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCCAATGCTTGCCAACGGAAAGACaaaaaaa > 2:2197177/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaaaaaaa > 1:3982871/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaaaaaaa > 1:3364782/1‑140 (MQ=255) aaGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAaga < 2:3471923/140‑1 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaa < 2:157686/127‑1 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:2281807/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 2:3082584/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 2:1892178/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGa > 1:1550665/1‑140 (MQ=255) atatGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGc > 1:179027/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGTGAAACAAACAAAGAAAGCAGATCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1914387/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAACGACACAAAAAGAGATCCGGAAAGCGACCgg > 2:3388593/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:3542280/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:3827935/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:2258951/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:54143/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGACAACGGAAAGACAAATAAAGAGATCCTGAAAGCGACCgg > 1:3774779/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGACGAGAAAGTATCTATAATTTTTGGGAAACCAACAAAGAAAGCAGGTCAAATGCGTGCCAACGGAAAGTCAAAATAAGAGCTCCTGAAAGCGGCCgg > 2:1141739/1‑140 (MQ=255) aaaaTATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCa > 1:634903/1‑140 (MQ=255) aaaTATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCaa > 2:3626528/1‑140 (MQ=255) tatGCGTGTAGATCACAACCAAATTAAGATAAAAGTCCAGAAAGTATCTAAAATTTTGGGGAAACAAACAAACAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCg < 1:2167108/140‑1 (MQ=255) tatGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAAAAAAGAACGCAGTTAAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCg < 2:4000431/140‑1 (MQ=255) atGATTTTAGATTATAAACCAATTAATATAAAAGTCGAGAAATTAACTAAAATTTTTGGCAAAAAAAAAAAGAAAGCAGTTCAAATGCTTGCCAACGCAAACACAAAAAAACAAATCCTCAAAGCGACCGGATCAACCGt < 2:1045735/140‑1 (MQ=255) tgtAGATGAGAAACCAATTAAGATCAGAGTCGAGACATTATCTAAATTTTGTGGGCACCAAACAAAGAACGACGGTCAAATGCTTGGCAACGGAAAGACAAAAAGAGCGAGCGTGACAGCGAGCGTCTCACCCGTTgggg > 1:3730350/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACACAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:1872519/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:2325105/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:1394787/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAATTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 2:3927073/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTCTCTAAGATTTTTGGGAAACAAACAAAGAAGGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCAACCGGATCAACCGTTGGGGtt > 1:2083001/1‑139 (MQ=255) aTGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAAt > 1:494630/1‑140 (MQ=255) agaAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCaa > 2:3163464/1‑140 (MQ=255) acacaatttAAGATAAACGCCGAGAAAGTATATAAAATTTTGGGGAAACAAACAAATAAAGCCGTTAAAAGGCTTGCCACCCGAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 1:4142379/133‑1 (MQ=255) aaaaCAATTAAGATAACAGTCGAGAAAGTATCTAAAATTTTTGGCAAAAAAAAAAAGAAAGCAGTTAAAATGCTGGCCACCGCAAAGAAAAAAAAAGAGACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 1:904508/140‑1 (MQ=255) aaaCCATTTAAGATAAAAGTCTAGAAAGTATCTAAAATTTTTGGCAAACAAACAAACACAGCAGTTCAAATGCTGGCCAACGCAAACAAAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 2:1614370/140‑1 (MQ=255) aaaCCAATTAAGATAAACGTCTACAAAGTAACTAAAATTTTTGGCAAACAAACAAAGAAAGCAGTACAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 2:1777181/140‑1 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTCAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:1253460/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:2532656/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:1710061/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:620832/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:426846/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:1610219/1‑140 (MQ=255) aaTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCATGAAAGCGACCGGATCAACCGTGGGGGTAAATCAAGCAGAtt > 2:2800682/1‑140 (MQ=255) aTTAAGACAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGATCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAttt > 2:2065300/1‑140 (MQ=255) tAAGATAAAAGTCGAGAAATTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:4167261/140‑1 (MQ=255) tAACATAAACGCCGAGAAAGAACCTAAAATTTTGGGCAAACAAAAAAAGACCGCATTCCAACTGGTTGCCAACGGAAACAAAAAAAAACCCAGCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:3442742/140‑1 (MQ=255) ataTAAACGTCGAGAAAGTATATAAAATTTTTGGTAAACAAAAAAATAAAGCAGTACAAATGCTTGCCAACGGAAAGACAAAAAAAGAGCTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:952616/138‑1 (MQ=255) acacaaaaGCCTAGAATGTATCTAAAATTTTGCGTAAACAAAAAAAGAAAGCTGTTCAAATGCTTGCCACCGGAAAGACAAAAAAAGAGATCCTTAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:3884637/136‑1 (MQ=255) aGAAAAAAGACGACAAAGTATATAAAATTTTTGGGAAACAAACAAAGAAACCAGTTCAAATGCTTGCCAACGCAAACACAAAAAAAGACACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:848643/140‑1 (MQ=255) taaaaacGTCGACAAACTATATAAAATTTTTGGCAAACAAACAAACAAAGCAGTACAAATGCTTGCCACCGCAACCAAAAAAAAAGACACCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATg < 1:3597406/137‑1 (MQ=255) aaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAATCGACCGGATCAACCGTTGGGGTAAATCACGCAGATTTTGATGtata > 2:238756/1‑140 (MQ=255) agtctttaaaTTATATAAAATTTTTGTGAAACAAACAAAGAAACCAGTTAAAAGGGTTGCCAACGGAAACACAAAAAAAGAGTTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatg < 1:4025495/133‑1 (MQ=255) tataaaTTATATAAAATTTTGGGCAAAAAAAAAAACAAACAATTAAAAAGGCTGGCAACCGCAAACACAAAAAAAGAGACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 2:2334716/137‑1 (MQ=255) taacttATCTAAATTTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGCAAACACAAAAAAAGAGAGCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:675936/135‑1 (MQ=255) caatttATCAAAATTTTTTGGCAAAAAAAAAAATAACGCTTTTAAAATGCTTCCCAACGTAAACAAAAAAAAAGATATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:1430991/135‑1 (MQ=255) caaaGTATATAAATTTTTTGGCAAAAAAAAAAAGAAAGCAGTAAAAATGGTTCCAAACGCAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:769564/139‑1 (MQ=255) aaGTATCTAAATTTTTTGGGAAAAAAAAAAAGAAAGAAGTTCAATTGCTTGCCAACGTAAAGACAAAAAAAGAGATCATTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTgag < 2:1925447/140‑1 (MQ=255) atatAAAATTTTTGGCAAACAAACAAAGAAAGCAGTAAAATTGCTGCCCAACGTAAAGAAAAAAAAATAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat < 1:2429652/137‑1 (MQ=255) aaaaTTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAATGAGATCCTGACAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAGCTGTTGAGGTCTGTGAGGGTGAGATATTTgg > 2:3608415/1‑139 (MQ=255) tttttGGCAAAAAAAAAAACAACCCATTTCAAATGCTTCCCAACGCAAACAAAAAAAAAGACATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatc < 1:2606911/140‑1 (MQ=255) ttttCGCAAACAAACAACGAACCCAGTACAAATGCTTGCCAACGCAAACACAACAAAAGAGCGCCTGAAAGCGACCGGATCAACCGTGGGGGTAAATCACGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca < 1:3383132/140‑1 (MQ=255) tttGTGAAACAAACACACAAAGACGTACACTGGCTGGCCAACGCAAACACAAAAAAAGAGTGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:3668635/140‑1 (MQ=255) ttggggAAACAAACAAAGAACGCCGTAAAAAGGCTTGCAAAGGGAACGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:3082584/137‑1 (MQ=255) tgtGGCAAACAAACAAACAAAGCCGTTCAAATGCTTCCCAACGCAAAGACAAAAAAAGACATCATTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:3626528/138‑1 (MQ=255) tGGGCAAAAAACAAATAAAGCAGTCAAACGGCTTGCCACCGGTAACCCAAACAATGCGCTCCTGAAAGCGACCGGATCAACCGTTGGGGTACATCAAGCAGTTTTTGATGTATATGATGGTGAGTTATTTGTCATCATgg < 2:332231/140‑1 (MQ=255) tGGCAAACAAACAAAGAAACCAGTTAAAATGCTTGCCAACGCAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:3515584/140‑1 (MQ=255) tGGCAAACAAAAAACGAACGCAGTTCAATTGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:1746166/140‑1 (MQ=255) tGGCAAAAAAAAAAAGAAAGCATTTAAAATGCTTGCCAACGTAAACACAAAAAAACAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:2835433/140‑1 (MQ=255) ggggAAACAAACAAACACAGCAGTACAAATGCGTGCCACCGCAAAGCCAAAAAAAGACCTCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:1932551/139‑1 (MQ=255) gtaaaaaaaaaaACAAACCAGTACAATTGCTTCCCAACGCAAACAAAAAAAAACAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 1:3308003/138‑1 (MQ=255) gaaaacaaacaaacAACGATCTTCAAATGCTGCCCAACGCAAAGACAAAAAAACAGAGCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 1:1643235/138‑1 (MQ=255) caaaGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 2:3364782/140‑1 (MQ=255) caaaGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 2:3182818/140‑1 (MQ=255) aagCAGTTAAATTGCTTGCCAACGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGt < 1:736306/140‑1 (MQ=255) atttCAATTGCTTGCAAACTCAAATACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 2:2511569/138‑1 (MQ=255) aGTTCAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 2:683654/140‑1 (MQ=255) aGTTCAAATGCTTCCCAACGGAAACAAAAAAAAAGAGATCCCGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 1:289742/140‑1 (MQ=255) aGTTCAAATGCTGGCCACCGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 1:1001248/140‑1 (MQ=255) tttCAAATTCTTGCCAACGCAAAGACAAAAAAAGATATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:1976117/139‑1 (MQ=255) gTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc > 2:254531/1‑140 (MQ=255) cAAATGTTTGCAAACGTAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 2:1236635/140‑1 (MQ=255) cAAATGGTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 2:1445629/140‑1 (MQ=255) cAAATGCTTGCCACCGGAACCACACAAAAAGAGCTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 2:2419987/140‑1 (MQ=255) | GTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316125‑316401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |