| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,425,640 | G→T | 6.3% | intergenic (+4/‑17) | EO946_RS12410 → / → EO946_RS12415 | DEAD/DEAH box helicase/YqhG family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,425,640 | 0 | G | T | 6.3% | 462.3 / 2.5 | 173 | intergenic (+4/‑17) | EO946_RS12410/EO946_RS12415 | DEAD/DEAH box helicase/YqhG family protein |
| Reads supporting (aligned to +/- strand): ref base G (44/109); new base T (2/17); total (47/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 176 total aligned reads displayed.
CAATTTTGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCTTACAGTTGAAATGGACAAACAGATC > NZ_CP034943/2425504‑2425779 | cAATTTTGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTAATAAAAAACATCAGCCTGCTGAAAAAAGAGGATCTTAGACTTTaa > 2:2954123/1‑140 (MQ=255) aaTTTTGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAag < 2:264268/140‑1 (MQ=255) ttttGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAagga < 2:1082665/140‑1 (MQ=255) ttttGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAagga < 1:1842176/140‑1 (MQ=255) ttttGAAGAGCACCTGCACGAAATATTGTACCATTCAGCAACAGAAGAAGACATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATCAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAagga < 1:905599/140‑1 (MQ=255) ttgtGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCACCAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAagga < 2:134658/137‑1 (MQ=255) aaGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTATCATGTAAGGAGGttt > 2:428197/1‑140 (MQ=255) aaGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGttt > 1:3029039/1‑140 (MQ=255) aaGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGAGAACTTAACCTCATTTTTGTCTTATAAAAAAAAGCAGCCGGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGttt > 1:4334206/1‑140 (MQ=255) agagCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGtttt < 1:2774607/140‑1 (MQ=255) cACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTTGCCTGTAAGGAGGTTTTATaa > 2:1618801/1‑140 (MQ=255) cACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATaa > 1:23467/1‑140 (MQ=255) cACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTGTTATaa > 1:741121/1‑140 (MQ=255) gCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTgag < 2:2313063/140‑1 (MQ=255) gCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTgag < 1:1614425/140‑1 (MQ=255) gCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTgag < 2:3104749/140‑1 (MQ=255) aaaTTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGc < 2:3442492/140‑1 (MQ=255) aTTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCaa < 1:1783712/140‑1 (MQ=255) ttttGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTCCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTGTATAAGTGAGACAGCAag > 1:970560/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGTATATTAGCATGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 2:1550172/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAagga > 2:1455636/1‑107 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAagga < 1:1455636/107‑1 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 2:3002575/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 2:421245/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 2:421398/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 1:4270767/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 2:606129/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 2:4059322/1‑140 (MQ=255) ttCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGa > 1:2013449/1‑140 (MQ=255) cAGAAGACGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTCAGGAGGTTTTATAAGTGTGACCGCTAGAGGGTCACGAgttggggc > 2:2209065/1‑135 (MQ=255) gaagaagaaATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCATCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCtt > 2:4094108/1‑140 (MQ=255) gaagaagaaATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCtt > 1:3756128/1‑140 (MQ=255) aTGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGttttttt < 1:1618801/140‑1 (MQ=255) aTGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGttttttt < 2:1711755/140‑1 (MQ=255) aaaaaTGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCaaa < 1:1512323/140‑1 (MQ=255) tGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGATTCGTTTTTTTAAGTAAAAAAGCt > 2:3193577/1‑140 (MQ=255) cTTAACCTCATTTTTGTCTTATAAAAAACAGCATCCTGCTGAAAAAAGAGGATCTTAGCCTTTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGGTTCGTTTTTTTCAGGCAAACAGCTGCCAAAt > 1:2951280/1‑140 (MQ=255) tAACCTCATTTTTTTCTTATAAAAAACAGCAGACTTCTGAAAAAAGATTATATTATCCTTTATGTAGGTTTTATAAGTGAGACAGCAAGTGGTTCTCGATTTTCTGATTCGTTTTTTTCAGGCAAAGAGCTGCCAAAtcg < 2:2013449/140‑1 (MQ=255) tAACCTCATTTTTGTCTTATAAAAAAGAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAAtcg < 1:1138684/140‑1 (MQ=255) ccTCATTTTTGTGTTATAAAAAACAGCACCCTGCTGAAACAGGAGGATCTTAGCCTGGAAGGAGGGTTTATAAGTGTGACAGGAAGAGGTTCACGATTTTCTGCTTGGTGTTTTTGTGGGGAAGAGCTGCCaactgggcg > 2:869140/1‑133 (MQ=255) cATTTTTTTCTTATAAAAATCTGAATCATTCTGATAATAGAGGTTCTTATCCTGTTTTTATTTTTTATAAGTGAGACAGCAAGTGGTTCACGATTTTGTGCTTCTTTTTTTTCAGGCATACAGCTGCCAAATCGTCGATc < 2:1786790/140‑1 (MQ=255) cATTTTTTTATTATAAAAAACAGCATCCTGCTGAAAAAAGAGGATATTAGCCTTTAAGGAGTTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATc < 2:2863840/140‑1 (MQ=255) cATTTTTGTCTTATAAAAAACAGCAGGCTCCTGAAAAAATAGGATCTTAGCCTTTAAGGAGGTTTTATAAGTGAGACATCAAGATGTTCCCGATTTTCTGCTTCGTTTTTTTCAGGCTAAAAGCTGCCAAATCGTCGATc < 1:1835421/140‑1 (MQ=255) cATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATc < 1:2810870/140‑1 (MQ=255) cATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATc < 1:84560/140‑1 (MQ=255) aaTTTTTGTATTATAAAAAACAGCAGCCTGCTTAAAAAAGAGTATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATc < 2:2195446/139‑1 (MQ=255) tttttGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCaa > 1:3645996/1‑140 (MQ=255) tttttGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCaa > 2:2544098/1‑140 (MQ=255) tGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGtt < 1:1013356/140‑1 (MQ=255) tGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGtt < 1:2320016/140‑1 (MQ=255) tGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGtt < 1:2545636/140‑1 (MQ=255) tGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGtt < 1:4059322/140‑1 (MQ=255) tGTCTTATAAAAAAAAGCCGCCTTCTGAAAAAAGAGTATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGTGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGtt < 2:2330637/140‑1 (MQ=255) tattATAAAAAACATCATCATTATTAAAAAATAGTATCTTATCATTTAATGATTTTTTATAATTGATACAGCAAGCGGTTCACTTTTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCAAAATCGTCGATCAAGGTTCa < 2:3384040/138‑1 (MQ=255) taataaaaaaaaCAGCCTCCTTCTGAAAAAATTGTATATTTGCATTTAAGGATTTTTTATAAGTGATACAGCAAGATGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 2:3979432/134‑1 (MQ=255) tCTTATACAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2911621/140‑1 (MQ=255) tCTTATAACAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCCAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2593671/140‑1 (MQ=255) tCTTATAAAAAACATCAGCCTGATTAAAAAAGAGTATATTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 2:408094/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTTCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:1917230/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2587485/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2960545/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 2:7364/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2981897/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:1118516/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 2:3645996/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2693836/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:2931732/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:505501/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:1099039/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTGAGCCTGTAAGGAGGATTTAGAAGTGAGACAGCAAGAGGTACACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAACTCGTCGATCAAGGTTCa < 1:2879633/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGATTAAAAAATATTATATTACCCTTTATGTATGTTTTTTAAGTTAGACATCATGTGTTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 2:2909725/140‑1 (MQ=255) tCTTATAAAAAACAGCAGCCTGATGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTCTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCa < 1:1753850/140‑1 (MQ=255) ttATAAAACACAGCAGCCTGCTGAAAAAAGAGGATATTAGCCTGTAAGGATGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 2:606497/140‑1 (MQ=255) ttATAAAAAACATCAGCCTTATGAAAAAAGATGATCTTAGACTGTAAGGAGGTTTTATAATTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTAAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 2:501484/140‑1 (MQ=255) ttATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 1:2296717/140‑1 (MQ=255) ttATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 1:540061/140‑1 (MQ=255) ttATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 1:2851824/140‑1 (MQ=255) ttATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 1:365928/140‑1 (MQ=255) ttATAAAAAACAGCAGACTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAgg < 1:3410995/140‑1 (MQ=255) taACAAACATCATCATTCTGAAAAAAGATGATCTTACCATGTAATGAGTTTTTATAAGTTATACATCAAGATGTTCACGATTTTCTGCTTATTTTTTTTCAGGCAAACAGCTGCCAATTCGTCGATCAAGGTTCAGGCta < 2:3255777/140‑1 (MQ=255) taAAAAACAGCTGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGTTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCATGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCta < 2:379447/140‑1 (MQ=255) aaCAGCAGCCTGCTGAAAAAATAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGa < 2:622091/140‑1 (MQ=255) aaCAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGa > 2:232726/1‑140 (MQ=255) aaCAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGa > 2:3775011/1‑140 (MQ=255) aaCAGCAGCCTCCTGAAAAAATATGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGTTGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGa < 2:2293790/140‑1 (MQ=255) cagcCTTATTAAAAAATAGTATCTTATCATGTAAGGAGTTTTTATAATTGAGACATCAATATGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTg < 2:2948488/140‑1 (MQ=255) cagcCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTg > 1:882689/1‑140 (MQ=255) cagcCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTg < 1:3193577/140‑1 (MQ=255) tgctgAAACAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCt < 1:3606925/140‑1 (MQ=255) tgctgAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCt < 1:779645/140‑1 (MQ=255) tgctgAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCt < 1:4307856/140‑1 (MQ=255) tgctgAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCt < 1:118966/140‑1 (MQ=255) atgAAAAAATAGTATCTTATACTTTATGTATTTTTTATAATTTAGACAGCAAGAGTTTCACTATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCTTa < 2:3136898/139‑1 (MQ=255) aaGATGATATTATCCAGTAAGGAGTTTTTATAATTTAGACAGCAAGTGGTTAACTTTTTTCTTCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATTTGACAGTGCAGCTTACAGTTGa < 2:4024407/140‑1 (MQ=255) gagGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCTTACAGTTGaaa < 1:428197/140‑1 (MQ=255) cttgATCTTAGCATTTAAGGAGTTTTTATAATTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGTCATACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATTACAGTGCAGCTTACAGTTGaaa < 1:3147152/137‑1 (MQ=255) cTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCTTACAGTTGAAATGGACa < 1:977702/140‑1 (MQ=255) attAGCCTTTATGGAGTTTTTATAAGTGAGACATCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGTTTCAGGCTATATGACAGTGCAGCTTACAGTTGAAATGGACa < 2:4142964/139‑1 (MQ=255) gTAATGATGTTTTATAAGTTATACAGAAAGATCTAAACTATTTTCTTCTTCGTTTTTTTCAGGCAAACAGCTTCCAAATCGTCTATCAAGGTTCAGGATATATGACAGTGCAGCTTACATTTGAAATGGACAAACAGATc < 2:3420516/140‑1 (MQ=255) gTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGTGTTTCTGCTTCGTTTTTTTCATGCAAACAGCTGCCTAATCGTCGATCACGGTTCAGGCTATATGAGAGTGCAGCTTACAGTTGAAATGGACAAACAGATc < 1:1025697/140‑1 (MQ=255) | CAATTTTGAAGAGCACCTGCACGAAATTTTGTACCATTCAGCAACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTTATAAAAAACAGCAGCCTGCTGAAAAAAGAGGATCTTAGCCTGTAAGGAGGTTTTATAAGTGAGACAGCAAGAGGTTCACGATTTTCTGCTTCGTTTTTTTCAGGCAAACAGCTGCCAAATCGTCGATCAAGGTTCAGGCTATATGACAGTGCAGCTTACAGTTGAAATGGACAAACAGATC > NZ_CP034943/2425504‑2425779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |