| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,268,712 | G→T | 9.5% | intergenic (+60/+150) | catR → / ← EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,268,712 | 0 | G | T | 9.5% | 576.3 / 18.6 | 237 | intergenic (+60/+150) | catR/EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base G (57/152); new base T (25/2); total (82/155) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 238 total aligned reads displayed.
AAGGCGTTGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAG > NZ_CP034943/3268578‑3268851 | aaggCGTTGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTTGCAgg > 1:1534515/1‑140 (MQ=255) ggCGTTGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTa > 2:1393658/1‑140 (MQ=255) gCGTTGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTTTTGATTTGGCAGGTaa > 1:3250789/1‑140 (MQ=255) ttGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTTGCAGGTaaaaa > 1:510773/1‑140 (MQ=255) ttGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTAATTTGGCCGGGaaaaa > 1:3624826/1‑140 (MQ=255) cccccATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGa < 2:10639/140‑1 (MQ=255) cATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTTCCAGGGAAAAAACGACtta > 1:927076/1‑139 (MQ=255) tattGGTTGAGATTTCTACATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGATAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:1118454/138‑1 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 1:1262795/140‑1 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:1778422/140‑1 (MQ=255) tCTGGGGTGAGTTTTCTAACTGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 1:178283/140‑1 (MQ=255) tgtgTGAGATTTCTAAAGTGGCGACGGATTGGATTGACCCTTCCTTTGTTTACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:3047670/137‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGTTTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:3955563/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCGTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:1012573/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:956487/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:2998526/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:737407/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:3373400/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:4024726/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:722185/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATGGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:1189621/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAAGTGCTAAAACGGTTCTGATCTCAAACGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:1810248/140‑1 (MQ=255) gtggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTATTTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:3007311/138‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:906489/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:3027417/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:1983708/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:1957063/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGAGTGGATGGACCGTTCCTTTCTTGACTAATTCCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:4324297/140‑1 (MQ=255) ggTGAGATTTCTAAAGGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:4323157/140‑1 (MQ=255) gTGAGATTTCTAAATGGGCGACGGATTGTATTGACCCTTCCTTTCTTGAATAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGa < 2:3104207/140‑1 (MQ=255) gTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGa < 2:3514908/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:830259/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:770112/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 2:1656943/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 2:1599612/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:2153152/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGatata < 2:3227012/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGatata < 2:2383897/140‑1 (MQ=255) aTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAAACACATCTCAGCCGatataa > 2:1929124/1‑139 (MQ=255) aTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTGATTTTCCAGGTAAAAAAACACATCTAACCCGatatat > 1:2442520/1‑140 (MQ=255) ttCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTCATAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATAtag < 1:2291031/140‑1 (MQ=255) ttCTAAATGGGCGACGGATTGGAGTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGAATTCTCAGCCGATATAtag < 2:3939271/140‑1 (MQ=255) cTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATAtagta > 2:4134749/1‑140 (MQ=255) ggCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGGCTTCTCAGGCGATATATAGTAGAAaccc > 2:2720392/1‑140 (MQ=255) ggCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAAcccc > 2:2174504/1‑140 (MQ=255) cGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGGTAAAAAAGAATTATCAGCCGATATATATTAGAAcccccc > 1:2965356/1‑138 (MQ=255) gattgACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGtttt < 1:2211838/140‑1 (MQ=255) aCCCTTCCTTTCTTGAGTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTGTTGCTTTGCCAGGTAAAAAACGACGTCTCCGCCGCTATAAAGTGGAACCCCCCATTGCGTTTTTTGcc > 1:1219010/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCATAGGCGAGAAAAGAGCCGTGTTTTTATTTTTCATTTTCCAGGTGAAAAAAGACTTCTCACCCCCTATATAGTAGAAACCCACAGAGGGTTTTTAggc > 1:4011643/1‑138 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAATATCCGTGTTTTTATTTTTGATTTGCCAGGTAAAAAACGCCTTATCAGACGATATATAGTTGAACCCCACATTTCGTTTTTAGcc > 2:189165/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGGCAGGTAAAAAAAGAATTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTTGcc > 2:323766/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAAAGACTTATCAGCCGAAATATAGTAAAAACCCAAATTTCGTTTTTATcc > 2:3287150/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTAATTTTGCAGGTAAAAAAACACTTGTCAGCCGATATATATTAGAACCCCACATTGCGTTTTTATcc > 1:562606/1‑140 (MQ=255) ccttccttTCTTGAATAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCga < 1:3754144/140‑1 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTTGCCGGGAAAAAACGACTTGTCAGCCGCTATATAGTAGTAACCCACCGTGCGTTTTTAGGCgaccg > 1:3272059/1‑137 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTGGCAGGTAAAAAAAGACTTCTCAGCCGATATATAGTAGAACCCCACATTTCGTTTTTTTCCgaaga > 2:3754312/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTTATTTTCCCGGTAAAAAAAAACTTATCACCCGCTATATAGTATAACCCCACCTAGCCTTTTTATCCggaaa > 1:1246881/1‑136 (MQ=255) tCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTTATTTTGCATGTAAAAAAAGACTTGTGAGCCGATATATAGTAGAAACCCACATTTCGTTTTTTTCCgaagctttgt > 1:3205219/1‑134 (MQ=255) aTTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTAAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGACTGTGAGCAGCTgg > 2:2255497/1‑140 (MQ=255) aTTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAAACAATTATAAGCCGATATATAGTATAACCCCACATTTCCTTTTTAGCCGGAGAAATTGAGCAGCTgg > 2:2759297/1‑140 (MQ=255) ggTTCTGATCTCAACGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCtt < 1:3081992/140‑1 (MQ=255) ggTTCTGATCTCAAAGGCGATAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCtt < 1:1365114/140‑1 (MQ=255) ggTTCTGATCACAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACTACTTCTCAGCCGATATATACTAGAACCCCACATTGCGTTTTTAGCCTAAGAATTTGAGCAGCTGGCGAAAGAGCtt < 2:2465335/140‑1 (MQ=255) ttCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCa > 2:1249583/1‑140 (MQ=255) ttCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACAGTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCa < 2:2823105/140‑1 (MQ=255) ttCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATGTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCa < 2:1525880/140‑1 (MQ=255) tCTTATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 1:3406219/140‑1 (MQ=255) tCTGATCTCAACCGCGAGAAAAGAGCCTTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGCACCCCACATTGCGATTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 1:2511193/140‑1 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTTATTTGGCCGGTAAAAAACGACTTCTCAGCCGGTGTGAATTAGAACCCCCCATTGCGTTTTTTTCCGTAGAATTTTTGCACCGGGCGCCAGAGCGTCAt > 1:961112/1‑140 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt > 2:919607/1‑140 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 1:2642967/140‑1 (MQ=255) tGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATga < 1:3804259/140‑1 (MQ=255) tGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATga < 1:1649247/140‑1 (MQ=255) ggCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGAt < 1:378160/140‑1 (MQ=255) ggCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGAt < 2:3833544/140‑1 (MQ=255) gCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATc < 1:2455350/140‑1 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGGCAGGGAAAAAACCACTTCTCAGCCGCTATATAGTAGAACCCCACATTGCGGTTTTATCCGAAGAATTTGAGCAGCTGGCGAAAGAGCATCATGAGAACATGGATCa > 2:597726/1‑140 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGa > 2:3350297/1‑71 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGa < 1:3350297/71‑1 (MQ=255) gaAAAGAGCCTTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:3667778/140‑1 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:619520/140‑1 (MQ=255) aaaaGAGCCGTTTTTTTATTTTTCATGTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTc < 2:3398846/140‑1 (MQ=255) aaaGAGCCGTTTTTTTATTTTTCATTTGCCCGGTAAAAAAAGACTTCTAAGCCGATATATAGTAGAACCCCACAATGCGTTTTTATCCGAAGAATTTTAGCACCTGGCGAAAGATCTTCATGTGAAAATGGAtaacttaa > 2:3481236/1‑133 (MQ=255) agCCGTTTTTTTATTTTTCATTTGCCATGTAAAAAACTACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAtt < 1:1837349/140‑1 (MQ=255) gCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAttt < 2:197799/140‑1 (MQ=255) ttATTTTTTTTTTTCCAGGTAAAACTCGTATTCTCAGCCTATATATAGTAGAACCCCACTTTGCGTTTTTAGCCGAATAATTTGAGCAGCTGGCGAAATAGCTTCTTGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:189165/140‑1 (MQ=255) ttATTTTTCATTTTCCAGGTAAAATACGACTTCTCTGCCGATATATAGTAGTACCCAACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAca < 2:1347569/140‑2 (MQ=255) ttATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:2497895/140‑1 (MQ=255) aTTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCa < 1:1094606/140‑1 (MQ=255) aTTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCa < 1:3547749/140‑1 (MQ=255) tttCATTTGCCAGTTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 2:2194836/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 2:2898237/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 1:2820072/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 1:160092/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:2174504/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:1422292/140‑1 (MQ=255) tCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTcc < 1:668670/140‑1 (MQ=255) tttGCCAGGTAAAAAACGACTTCTCTGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 1:4134749/140‑1 (MQ=255) tttGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 1:4194136/140‑1 (MQ=255) ttGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGAt < 1:2711691/140‑1 (MQ=255) | AAGGCGTTGGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAG > NZ_CP034943/3268578‑3268851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |