| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,268,725 | C→A | 10.9% | intergenic (+73/+137) | catR → / ← EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,268,725 | 0 | C | A | 10.9% | 582.4 / 13.6 | 232 | intergenic (+73/+137) | catR/EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base C (35/162); new base A (33/2); total (68/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.30e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 234 total aligned reads displayed.
GGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACATGGGCT > NZ_CP034943/3268586‑3268861 | ggCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAAc > 2:1902013/1‑140 (MQ=255) cccccATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGa < 2:10639/140‑1 (MQ=255) cATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTTCCAGGGAAAAAACGACtta > 1:927076/1‑139 (MQ=255) tattGGTTGAGATTTCTACATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGATAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:1118454/138‑1 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 1:1262795/140‑1 (MQ=255) tgtgTGAGATTTCTAAAGTGGCGACGGATTGGATTGACCCTTCCTTTGTTTACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:3047670/137‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGTTTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:3955563/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCGTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:1012573/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAGACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:2178816/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:1774873/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:956487/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:4332924/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:3388509/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:409664/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:221360/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:2998526/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATGGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:1189621/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAAGTGCTAAAACGGTTCTGATCTCAAACGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:1810248/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTTCCAGGTAAAAAAAGACTTATGAGCCg > 1:3506148/1‑140 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:906489/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:3480478/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:1983708/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGAGTGGATGGACCGTTCCTTTCTTGACTAATTCCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:4324297/140‑1 (MQ=255) ggTGAGATTTCTAAAGGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:4323157/140‑1 (MQ=255) ggTGAGATGTCAAAATGGGCGACGGATTGGCTGCACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCACAGGCGACAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:250572/140‑1 (MQ=255) gTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGa < 2:3514908/140‑1 (MQ=255) tatttttCTATATGGGCGAGGTATTGTATTGACGCTTCATTTCTTGAATAATTTCTAAAACGGTTCTGATATCAAAGGCGATAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:1500897/136‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:770112/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 2:2151050/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 2:1656943/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 2:1599612/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:830259/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:2153152/140‑1 (MQ=255) gaTTTCTAACGGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAACCGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGatata < 1:1600813/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGatata < 2:3227012/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGatata < 1:3267024/140‑1 (MQ=255) aTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTGATTTTCCAGGTAAAAAAACACATCTAACCCGatatat > 1:2442520/1‑140 (MQ=255) ttCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTCATAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATAtag < 1:2291031/140‑1 (MQ=255) cTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATAtagta < 1:3168690/140‑1 (MQ=255) tAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATAtagtag > 2:2455350/1‑140 (MQ=255) ggCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAAcccc > 2:3278522/1‑140 (MQ=255) ggCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTAAAAAAAGACTTATCACCCGATATAAAGTAGAAcccc > 2:1422292/1‑140 (MQ=255) cGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGGTAAAAAAGAATTATCAGCCGATATATATTAGAAcccccc > 1:2965356/1‑138 (MQ=255) cGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACAtt < 1:3802842/140‑1 (MQ=255) gattgACCCTTCCTTTCTTTACTAATTGCTAACACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGtttt < 1:3821444/140‑1 (MQ=255) aCCCTTCCTTTCTTGAGTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTGTTGCTTTGCCAGGTAAAAAACGACGTCTCCGCCGCTATAAAGTGGAACCCCCCATTGCGTTTTTTGcc > 1:1219010/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCATAGGCGAGAAAAGAGCCGTGTTTTTATTTTTCATTTTCCAGGTGAAAAAAGACTTCTCACCCCCTATATAGTAGAAACCCACAGAGGGTTTTTAggc > 1:4011643/1‑138 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGCTTTGCCAGGTAAAAATCGAATTCTGAGCCGCTCTTTAGTATAACCCCCAATTGCGGGTTTAGcc > 1:4072021/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGGCAGGTAAAAAAAGAATTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTTGcc > 2:323766/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGcc > 2:636587/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACAGTGCGTTTTTAGcc > 2:729532/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAAAGAATTATAAGCCGATATATATTAGAACCCCACATTGCGTTTTTATcc > 2:272434/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTAATTTTGCAGGTAAAAAAACACTTGTCAGCCGATATATATTAGAACCCCACATTGCGTTTTTATcc > 1:562606/1‑140 (MQ=255) ccttccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCTTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCga < 1:3754312/140‑1 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTTTTTATTTTGCCGGTAAAAAAAACAATGTGAGCCGATATATAGTAGAACCCCCCAGTGGGTTTTTATCCggagg > 1:3616143/1‑139 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTTTTTATTTTGAACGTTAAAAAAAACTTCTGGCCCGATTTATTGTTGAAACCCCCAATGGGTTTTTATGCgaaga > 1:1682014/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTGGCAGGTAAAAAAAGACTTCTCAGCCGATATATAGTAGAACCCCACATTTCGTTTTTTTCCgaaga > 2:3754312/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTTATTTTCCCGGTAAAAAAAAACTTATCACCCGCTATATAGTATAACCCCACCTAGCCTTTTTATCCggaaa > 1:1246881/1‑136 (MQ=255) ccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACATCTAAGCCCAAATATAGGAGAACCCCAACATGCGTATTTATCCgacgaa > 2:2315059/1‑140 (MQ=255) tCTTGACTAATTGCTAAAACGGTTCTGATCACAAAGGCGAGAAAAGAGCCGTTTTTTTATTTATAAATTGCCAGGTAAAAAAAGACTTCTCAGCCGATATATAGTAGAAACCCACATTGCGTTTTTAGCCGAAGAAATTg > 2:3939022/1‑140 (MQ=255) aCTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTTATTTTGCAGGTAAAAAAAGACATAGGAGCCCATATATATTATAAACCCCCAATGGGTGTTTATACGAACAATTTTatcag > 1:601189/1‑140 (MQ=255) aTTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTAAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGACTGTGAGCAGCTgg > 2:2255497/1‑140 (MQ=255) ggTTCTGATCTCAACGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCtt < 1:3081992/140‑1 (MQ=255) ggTTCTGATCTCAAAGGCGATAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCtt < 1:1365114/140‑1 (MQ=255) ttCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACCTTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCa < 2:293426/140‑1 (MQ=255) ttCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACAGTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCa < 2:2823105/140‑1 (MQ=255) tCTGATCTCAACGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 1:2538392/140‑1 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTTATTTGGCCGGTAAAAAACGACTTCTCAGCCGGTGTGAATTAGAACCCCCCATTGCGTTTTTTTCCGTAGAATTTTTGCACCGGGCGCCAGAGCGTCAt > 1:961112/1‑140 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt > 2:919607/1‑140 (MQ=255) tccaaGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACAGTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 1:3022262/137‑1 (MQ=255) tcAAAGGCTAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 1:1646961/140‑1 (MQ=255) tcAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 2:1237488/140‑1 (MQ=255) ggCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGAt < 2:2679370/140‑1 (MQ=255) cgCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGAt < 1:2481902/139‑1 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGGCAGGGAAAAAACCACTTCTCAGCCGCTATATAGTAGAACCCCACATTGCGGTTTTATCCGAAGAATTTGAGCAGCTGGCGAAAGAGCATCATGAGAACATGGATCa > 2:597726/1‑140 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGa > 2:3350297/1‑71 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGa < 1:3350297/71‑1 (MQ=255) gaAAAGAGCCTTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:3667778/140‑1 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:1881608/140‑1 (MQ=255) aaaaGAGCCGTTTTTTTATTTTTCATGTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTc < 2:3398846/140‑1 (MQ=255) agCCGTTTTTTTATTTTTCATTTGCCATGTAAAAAACTACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAtt < 1:1837349/140‑1 (MQ=255) gCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAttt < 2:197799/140‑1 (MQ=255) gCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAttt < 2:4011643/140‑1 (MQ=255) ttATTTTTTTTTTTCCAGGTAAAACTCGTATTCTCAGCCTATATATAGTAGAACCCCACTTTGCGTTTTTAGCCGAATAATTTGAGCAGCTGGCGAAATAGCTTCTTGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:189165/140‑1 (MQ=255) ttATTTTTCATTTTCCAGGTAAAATACGACTTCTCTGCCGATATATAGTAGTACCCAACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAca < 2:1347569/140‑2 (MQ=255) aTTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCa < 1:1094606/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 2:2898237/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 1:2820072/140‑1 (MQ=255) tttCAAGTGCCAGCTAAAAAACGACTTCTCAGCCGATAGATAGTATAACCCCACATTGCCTTTTTAGCCGAAGAATTTGAGCAGCGCGCGAAAGAGCTGCATGAGAAGATGGAGCAGTTCACATTTAAAATAACCCACGt < 2:61103/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:3278522/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:2174504/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:1952278/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:1422292/140‑1 (MQ=255) tCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTcc < 1:668670/140‑1 (MQ=255) tttGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 1:4194136/140‑1 (MQ=255) tgtGCCAGCTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCCGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 2:3034852/138‑1 (MQ=255) ttGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGAt < 1:2711691/140‑1 (MQ=255) tAAAAAACGACGTCTCAGCCGCTCTATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGACGATGGATAAGTTAACATTTAAAATAACCCACGTCCAGATAGGACATg < 2:748494/140‑1 (MQ=255) aaaaaCGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACAt > 2:1444834/1‑137 (MQ=255) aaaCGACTTCTCAGCCGAGATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACATGGGCt < 1:2663400/140‑1 (MQ=255) | GGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACATGGGCT > NZ_CP034943/3268586‑3268861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |