| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 438,810 | G→T | 6.0% | intergenic (‑76/‑30) | gabR ← / → gabT | transcriptional regulator GabR/4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 438,810 | 0 | G | T | 6.0% | 573.3 / 4.3 | 246 | intergenic (‑76/‑30) | gabR/gabT | transcriptional regulator GabR/4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| Reads supporting (aligned to +/- strand): ref base G (121/96); new base T (4/22); total (127/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.06e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 260 total aligned reads displayed.
ATAAATTTGCTGATAGATATAATCGGCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCAAAGGAGT > NZ_CP034943/438672‑438949 | aTAAATTTGCTGATAGATATAATCGGCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGt < 1:2903298/140‑1 (MQ=255) caggatagataAAAACGGATTATAATGAGAAGTAGAGTTAAAATTTGATCTACATTTGAAGATTCTCATTCTGGTACCATCAAAAAGTTATAATTGTTAATATTCATCAAACCAAAAAGAAGTAAATATGGTAAAAAAAt > 2:4062259/4‑140 (MQ=255) caagatagataTAATATGATTGTTATAAGCAGTCGAGTGAGAATGTGATGTACATTTTCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATAACAAAAAGAAGTCAGAATGGTAATAAAAt > 2:875175/4‑140 (MQ=255) atttaATCGGCTTGTTCTGAGGGGTGGAGTGTGAATGTGATGTCCTTTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGTTAAGAAAATAGCGACAg < 2:2407572/137‑1 (MQ=255) atatAATCGGTTTGTTCTGCGCGGTCGAGTGTGAATGTTATGTCAATTTGCATATTCTCCTTCTGGTACAAACAAAAAGTTATAATTGGTACTTTTCATCATACAAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAg < 2:2179900/140‑1 (MQ=255) ataATCGGCTTGTTCTGAGCGGTCTAGTGTTATTGTGATGTCCATTTGCAGATTCTCCTTCTGGTACAATCAAAAAGTTATAATTGTTACTTTTAATCATACCAAAAAGAAGTCAGAATGTTAAGAAAATAGCGACAggg < 2:785137/140‑1 (MQ=255) taTCGGCTGGTTGTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGAGTCTCCTTGTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACAAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAggggg < 2:3622868/139‑1 (MQ=255) actCGGCTTGTTCTGCGCGGTCGTGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACAATCAAAAATTTATATTTGGTACTTTTCATCATACCAAAAAGAAGTCAGAAGGGTAATAAAATAGCGACAggggg < 2:1482870/138‑1 (MQ=255) tCGGCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGAc > 2:2315322/1‑140 (MQ=255) tCGGCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGAc > 1:3148189/1‑140 (MQ=255) tCGGCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGAc > 1:3264922/1‑140 (MQ=255) gggCTTTTTCTGAGCGGTCGTGTGTTAATGTGATTTCATTTTGCATATTCTCCTTCTGTTACCATCAAAAATTTATAATTGGTACTTTTCATCATACAAAAAAGAAGTCATAATGGTAAGAAAATAGCGACAGGGGGACa < 2:535168/139‑1 (MQ=255) gggCTGGTGCTGCGCGGTCGAGTGTGAATGTGATGGCCATTTGCACATTCTCCTTCGGGTACCATCAAAAAGTTATAATTGGAACTTTTCATCATACCAAAAAGAAGTCACAATGGTAAGAAAATAGCGACAGGGGGACa < 2:2224768/139‑1 (MQ=255) cGGCTTGTTCTCAGGGGTCGTGTGTTATTGTGATGTCCATTTGCAGTTTCTCCTTCTGGTACCATCAAAAAGTTTTAATGGGTACTTTTCATCATACCAAAAAGAAGTCAGAAGGGTAAGAAAATAGCGACAGGGGGACa < 2:251264/140‑1 (MQ=255) gCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATa > 2:2870061/1‑140 (MQ=255) cTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCAGTTGCAGATTCTCATTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTAATCATAACAAAAACAAGTCAGAATGGTAAGAAAATCTCGACAGGGGGACCTAc > 2:3272806/1‑140 (MQ=255) ttGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACg > 1:3829512/1‑140 (MQ=255) ttGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACg > 1:1079759/1‑140 (MQ=255) tGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCATATTCTCCTTCTGGTACCAACAAAAAGTTATAATTGGTAGTTTTCATCATACCAAAAATAAGTCACATTGGTAAGAAAATAGCGACAGGGGGACATACGc < 2:510460/140‑1 (MQ=255) tGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATActc > 2:1041602/1‑138 (MQ=255) tGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGc > 2:4183403/1‑140 (MQ=255) gTTCTGAGCGTTCGAGTGTGATTGTGATGTCATTTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTAATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCa < 2:2362937/140‑1 (MQ=255) ttCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCAt > 2:3130064/1‑140 (MQ=255) gAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGt > 1:1377666/1‑140 (MQ=255) aGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACCTACGCATGAGTc > 2:1181966/1‑140 (MQ=255) aGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTc > 2:3694727/1‑140 (MQ=255) aGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTc > 2:1216170/1‑140 (MQ=255) aGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTc > 1:3296546/1‑140 (MQ=255) aGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTc > 1:1781202/1‑140 (MQ=255) aGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTc > 1:1011961/1‑140 (MQ=255) gctgTCGTGTTTGAATGTGTTGCACATTTGCCTATTCTCCTTCTGGTACAACCAAAATGTTTTAATTGTTACTTTTCATCATACCAAAATTAAGAAAGATTGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCa < 2:696906/137‑1 (MQ=255) gggcGAGTGTGAATGTTATTTCCATTGGCACATTCACCTTCTGGAACCATCAAAAAGTTTTACTTGCTACTTTTCATAATACAAAAAATAAGTCAGAAGGGTATGAAAAAAGCGACAGGGGGACATACGCATGAGTCaaa < 2:3034362/137‑1 (MQ=255) gTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaac > 1:500272/1‑140 (MQ=255) tCGAGTGTGACTGTGATGTCCATGTGCAGATTCTCCTTCTGGTACCAGCAAAAAGTGATCATTGGTACTTTTCATCATACCAAAAAGAAGTCCGAATGGTCAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 1:2061368/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 2:166386/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 2:4128394/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 2:3943909/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 2:3562438/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 2:977631/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 1:3607833/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 1:3540420/1‑140 (MQ=255) tCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAaaca > 1:1643899/1‑140 (MQ=255) aacattgtcAATGTGATGTAAATAAGAATAATCTACTTATGGTACCATCAAAAAGTTATAATTGGTACTTTTCATAATACAAAAAAGAAGTCAGAATGGTAAGAAAATAGAGACAGGTGAAAATAATCATTATTCaaaaa > 2:2359400/6‑138 (MQ=255) tgtgAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGACGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACagc > 1:465961/1‑140 (MQ=255) ttcattgtgATGACCATTTCACTTTTCTCCTTCTGGTACCAAAAAAAATTTATAATTGGAACTTTAAATCATACCAAAAATAAGACAGATTGTTAACAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACagca < 1:2214942/135‑1 (MQ=255) gttaaTTTGATGTCCTTTTGCTTTTTCTACTTCTGTTAACATAAAAAATTTATAATTGGTACTTTTCATCATACCAAAAATAAGTCAGAATGGTAATAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACagca < 2:2157142/137‑1 (MQ=255) aTGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACagcaagca > 2:2744/1‑140 (MQ=255) aTGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACagcaagca > 1:2769776/1‑140 (MQ=255) aTGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACagcaagca > 2:1921963/1‑140 (MQ=255) tgtgATGTCCATTTGCAGATTCTCCTTCTGGTACCATAAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCAt < 2:4037375/140‑1 (MQ=255) gATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCAc > 2:4279985/1‑140 (MQ=255) aTGTCCATTTGCAGATTCTCCTTCCGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAATTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACg > 2:2901731/1‑140 (MQ=255) tGTCCATTTGCATTTTCACATTCTGGAACAAAAAAAACTTTATATTGGTTAATTTCCAACATACAAAAAACAAGACACAATGGAACCAAAACAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGa < 1:1209961/140‑1 (MQ=255) tGTCCATTTGCAGATTCTCCTTCTGGTACAATCAAAAAGTTATAATTGGTACTTTTCATAATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGa < 2:809246/140‑1 (MQ=255) gttCCATTGCCAGATTCCCCTTCTGGAACAACCAAAACGTTAAACTTGGTACTTTTCAACAAACAAAAAACAAGTCAGATTGGTAACAAAAGCGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGa < 1:2275596/138‑1 (MQ=255) gTCCTTTTGCAGATACTCCTACTGGTACAATCAAAAATTTATAATTGGTACTTTTCATCATACAAAAAACAAGTCACAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGAc < 1:408680/140‑1 (MQ=255) gTCCATTTGCAGATACTACTTCTGGAACCAACAAAAAGTTATAATTGTTACTTTACATCATACAAAAAAGAAGTAAGAATGCTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGAc < 1:4222113/140‑1 (MQ=255) tttGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGccc > 2:1724303/1‑140 (MQ=255) cAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTg > 2:1441406/1‑140 (MQ=255) gATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGgc > 1:2987211/1‑140 (MQ=255) tctcCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGgcagc > 2:837745/1‑140 (MQ=255) ccTTCTGGAACCAAAAAAAATTTATAATTGGTACTTTTCAACATACAAAAAATATGTCAGATTGTTAACAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCaaa < 1:2179905/140‑1 (MQ=255) gTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGa > 1:1202628/1‑140 (MQ=255) aCCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGc > 2:612942/1‑140 (MQ=255) tCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGTATGGGAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCACtt > 2:2204633/1‑140 (MQ=255) tCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCCACACCGGGAGCCAtt > 2:2985861/1‑140 (MQ=255) tCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAAtt > 2:262856/1‑140 (MQ=255) tCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGGCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAAtt > 2:2089045/1‑140 (MQ=255) caacaaGTTATAATTGCCACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAACAACGGGAGCAATTc < 2:2706263/140‑1 (MQ=255) cAAAAAGTTATAATTGGTACTTTTCATCATACAAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTc < 2:722536/140‑1 (MQ=255) aaaaaaGTTATAATTGTTACTTTTAATCATACCAAAAAGAACTCAGAATGGTAATAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTc < 2:1535471/139‑1 (MQ=255) aaaaGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGTTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGt < 1:2896068/140‑1 (MQ=255) gTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGACAATAGCGACATGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACCGGAGCAATACGTCTcc > 2:3613062/1‑140 (MQ=255) tataATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCACCAAAAACGGGAGCACTTCGTCTCCaa > 1:887414/1‑140 (MQ=255) ataATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCaaa > 1:613662/1‑140 (MQ=255) tttttAATCATAAAAAAAATATTTCTTATTGTTAATAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCa < 1:1497213/139‑1 (MQ=255) tttCATCCTCCCGAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAAc < 2:215574/140‑1 (MQ=255) tttCATCATACCAAAAATAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAAc < 1:2374204/140‑1 (MQ=255) tttCATCATACCAAAAAGTAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAAc < 2:3376426/140‑1 (MQ=255) tttCATCATACCAAAAAGAAGTCAGAATGGAAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAAc < 2:1021564/140‑1 (MQ=255) ttCATCATACCAAAAAGCAGTCAGAAGGGTAACAAAATAGCGACAGGGGGACATACGCATGCGTCAAACAACAGCAATCAGCACGACTGGCGAGTCGCAGCAAAAACGGGAGCAATACGTCTCCCAAGGTGTGCGCACCg > 1:2810598/1‑140 (MQ=255) ttCATAATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAAAAGCAAGCATCACTACTGACCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACg > 1:2643189/1‑140 (MQ=255) catACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTc > 1:3096232/1‑113 (MQ=255) tACCAAACCGAAGTCAGCAGGGTAACAAATTAGCGACAGGGGGACATACGCATGAGTCAAACCACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAACCGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACTGCAACCg < 1:2129290/140‑1 (MQ=255) tACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCg < 2:1202558/140‑1 (MQ=255) aCCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGc > 2:3436510/1‑140 (MQ=255) cAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAg > 2:1687902/1‑140 (MQ=255) caagTCATAAGGGTAATAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGc < 1:250345/139‑1 (MQ=255) aagTAAGAATGTTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCa < 2:3220227/140‑1 (MQ=255) tCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGC‑AAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCa < 2:1584198/140‑1 (MQ=255) cataaTGTTAACAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCa < 2:2598360/137‑1 (MQ=255) aGACTGGTAACAAAACAGCGACAGGGGCACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCaa < 1:1441651/140‑1 (MQ=255) aGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTAAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCaa < 2:2306887/140‑1 (MQ=255) gattGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCaaa < 1:1687902/137‑1 (MQ=255) gAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCaaa < 1:3908268/140‑1 (MQ=255) aaTGGTAAGAAAATAGCGACACGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCACCGGCAACCGCAGTCTGGCAGTCAAAg > 1:3732275/1‑140 (MQ=255) gTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAGACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCAAAGGAGt < 2:1425744/140‑1 (MQ=255) gTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCAAAGGAGt < 1:4279985/140‑1 (MQ=255) gTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCAAAGGAGt < 1:3943909/140‑1 (MQ=255) gTAAGAAAAGAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCAAAGGAGt < 2:3742535/140‑1 (MQ=255) | ATAAATTTGCTGATAGATATAATCGGCTTGTTCTGAGCGGTCGAGTGTGAATGTGATGTCCATTTGCAGATTCTCCTTCTGGTACCATCAAAAAGTTATAATTGGTACTTTTCATCATACCAAAAAGAAGTCAGAATGGTAAGAAAATAGCGACAGGGGGACATACGCATGAGTCAAACAACAGCAAGCATCACGACTGCCCAGTGGCAGCAAAAACGGGAGCAATTCGTCTCCAAAGGTGTGAGCAACGGCAACCGCAGTCTGGCAGTCAAAGGAGT > NZ_CP034943/438672‑438949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |