New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	607524 =	89 (0.610)	18 (0.140) +GGCTGGTCCGACGTCC	6/220	NT	12.8%	coding (367/1125 nt)	EO946_RS03185	collagen‑like protein
	?	NZ_CP034943	= 607858	191 (1.310)					coding (701/1125 nt)	EO946_RS03185	collagen‑like protein

CCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/607661‑607524 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGTGGCTCCCGTGGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG  <  NZ_CP034943/607858‑607720                                                                                                                                           ||||||||||||||||                                                                                                                                            CCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCGCCGGTAGCTCCTGTCGCTCCGGGTGGTCCGGGTTCCCCAGTCGGGCCTGTGGGTCCGGTGGCGCCGGCTGGTCCGGCGTCCCCGGGAGCTCCTGGCGCTCCGt                                                                                                                                                           >  1:780056/1‑139                                                                                                          TGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                                                                           <  2:63657/35‑1                                                                                                          TGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGG                                                                                                                                                           >  1:63657/1‑35                                                                                                           tGTCCGGCTTCCCCGGTAGCTCATGTCGCTCAGGCTGGTCCGACTTCCCCTGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCC                                                 <  2:2194319/139‑1                                                                                                                      CCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCG                                      <  1:1099409/140‑1                                                                                                                      CCCGGTAGCTCCGGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCG                                      <  1:2098390/140‑1                                                                                                                               tgcgGTCGCTCCCGCTGGTGCGCCGGCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  2:639030/136‑1                                                                                                                               tgCTGTCGCTCCGGCTGGTGCGACGTCCCCAGTCGCCCCTGTGGCTCCGGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  2:2111862/138‑1                                                                                                                               TCCTGTCGCTCCGGCTGGTCCGACTTCGCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  2:28418/140‑1                                                                                                                               TCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  1:516160/140‑1                                                                                                                               TCCTGTCGCTCCGGCTGCTCCGCCGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  2:589884/140‑1                                                                                                                               TCCTGTCGCTCAGGCTGGTCCGCCGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  2:2268189/140‑1                                                                                                                               TCCTGTCGCTACGGCTGGTGCGACGTCCCCTGTCGCCCCTGTGGCTCCGGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGGGGCTCCCGTCGCTCCGG                             <  2:213288/140‑1                                                                                                                               TCCTGGCGCTCCGGCTGGTCCGCCGTCGCCAGTCGCTCCCGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                             <  2:1461840/140‑1                                                                                                                                CCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGT                            <  2:1640120/140‑1                                                                                                                                CCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGT                            <  2:1445217/140‑1                                                                                                                                CCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGT                            <  2:54002/140‑1                                                                                                                                CCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGT                            <  2:223312/140‑1                                                                                                                                CCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGGTGGTCCGGCGTCACCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGT                            >  1:1502782/1‑140                                                                                                                                CCTGTCGCTCCGCCTGGTGCGACTTCCCCAGTCGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGT                            <  2:397083/140‑1                                                                                                                                    TCGCTCCGGCTGGTCCGACTTCGCCAGTAGCGCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGT                        <  1:1116132/140‑1                                                                                                                                            gccGGTCCTACGTGCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  2:1563962/137‑1                                                                                                                                            gccGGTCCGACGGCCCCAGTCGCCCCCGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  2:597928/137‑1                                                                                                                                            GCTGGTGCGACGTCCCCTGTCGCCCCTGTGGCTCCCGTCGCTCCGGGTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  2:564583/140‑1                                                                                                                                            GCTGGTGCGACGTCCCCAGTCGCCCCGGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  2:2033932/140‑1                                                                                                                                            GCTGGTCCGACGTCCCCAGTCGCCCCAGTGGCTCCCGTCTCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  1:768816/140‑1                                                                                                                                            GCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  2:1859678/140‑1                                                                                                                                            GCTGCTGCGACGTCCCCGGTAGCCCCCGTGGCTCCAGTCGCTCCGGTGGGTCCGGCTTCCCCGGTAGCTCCTGGCGCTCCGGCTGGTGCGACGGCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTC                <  2:436225/140‑1                                                                                                                                                GTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCG            <  2:2319399/140‑1                                                                                                                                                 TCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGG           >  1:1344266/1‑140                                                                                                                                                  CCGACGGCCCCAGTCGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGT          <  2:2409003/140‑1                                                                                                                                                      CGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGGTGGTCCGGCTTCCCCGGTAGCg      >  1:1988713/1‑139                                                                                                                                                          CCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGCCGTCCCCCGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG  >  2:512266/1‑140                                                                                                                                           ||||||||||||||||                                                                                                                                            CCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/607661‑607524 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGTGGCTCCCGTGGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG  <  NZ_CP034943/607858‑607720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.