BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NZ_CP034943	1,902,266	C→T	5.6%	A9A (GCG→GCA)	EO946_RS09605 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	1,902,266	0	C	T	5.6%	340.1 / 7.0	106	A9A (GCG→GCA)	EO946_RS09605	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (24/76); new base T (3/3); total (27/79)
Fisher's exact test for biased strand distribution p-value = 1.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.72e-01

Only 100 of 106 total aligned reads displayed.

CATCATCTGCATTTTGGCCGGCTTTCAACTCATGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGTT  >  NZ_CP034943/1902130‑1902399

catcatCTGCATTTTGGCCGGCTTTCAACTCATGCATTTCCTGCGGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCt                                                                                                                                    <  2:2103643/140‑1 (MQ=255)

         cATTTTGGCCGGCTTTCAACTCATGCATATACTGCAGGTCGGCTACGGCATTAAAATGATGGCCGATAGCAAATGAGTTGGGAATGGACAACAAATGAAATCTGTCAATCGCCAAAAATAATATGGACCCTTAAACTATc                                                                                                                           >  1:1975890/1‑140 (MQ=255)

                        tCAACTCATGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCaaa                                                                                                            <  1:1549221/140‑1 (MQ=255)

                         cAACTCATGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAAt                                                                                                           <  1:1674861/140‑1 (MQ=255)

                               aTGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATTGAGAACAAATGAAAACTGGCAATCGCCAAGAATAAGATGGATGCTTTCAATATCGTTACTTTTTTCAAATGAtctc                                                                                                     >  2:1912350/1‑140 (MQ=255)

                               aTGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATTGAGAACAAATGAAAACTGGCAATCGCCAAGAATAAGATGGATGCTTTCAATATCGTTACTTTTTTCAAATGAtctc                                                                                                     >  2:1912854/1‑140 (MQ=255)

                               aTGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATTGAGAACAAATGAAAACTGGCAATCGCCAAGAATAAGATGGATGCTTTCAATATCGTTACTTTTTTCAAATGAtctc                                                                                                     >  2:1912873/1‑140 (MQ=255)

                               aTGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGAtctc                                                                                                     >  2:1345215/1‑140 (MQ=255)

                               aTGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGAtctc                                                                                                     >  2:2186738/1‑140 (MQ=255)

                                  gaTTTCCTGCTTGTAGGCTACGGGTTTATAATGATGGCAGATATAAATGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  2:2374749/139‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATTGAGAACAAATGAAAACTGGCAATCGCCAAGAATAAGATGGATGCTTTCAATATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:1912873/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATTGAGAACAAATGAAAACTGGCAATCGCCAAGAATAAGATGGATGCTTTCAATATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:1912854/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATTGAGAACAAATGAAAACTGGCAATCGCCAAGAATAAGATGGATGCTTTCAATATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:1912350/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:517551/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  2:1636907/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:2025425/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:2066478/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  2:2399948/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  2:828880/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:641000/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:699436/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:1404047/140‑1 (MQ=255)

                                  cATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAACGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  2:562030/140‑1 (MQ=255)

                                  cATTTACTGCTTGTCGGCTACGGCTTTATCATGATGGCCGATATCACAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTATTTTCAAATGATCTcccc                                                                                                  <  1:606098/140‑1 (MQ=255)

                                       ccTGCTGGTCGGCTACGGCTTTATAATGCTGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  1:1377207/135‑1 (MQ=255)

                                       ccTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  >  2:1377207/1‑135 (MQ=255)

                                        ctggtgGTCGGCTAGGGCTTTATTATGTTGGCCGATATCAAAGGCGTGTTTAATGGAGAACAAATGAAATCTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCtt                                                                                            <  2:2299097/140‑1 (MQ=255)

                                        ctgctgGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCtt                                                                                            <  2:769618/140‑1 (MQ=255)

                                          gctgGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTa                                                                                          >  1:389264/1‑140 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGCTGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  1:2145586/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAACGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  1:1916954/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACACATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  2:2053461/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  1:1916918/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  1:1565179/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  2:131903/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  1:51538/140‑1 (MQ=255)

                                             ggTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAata                                                                                       <  1:1916524/140‑1 (MQ=255)

                                              gTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  <  2:842250/128‑1 (MQ=255)

                                              gTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTcccc                                                                                                  >  1:842250/1‑128 (MQ=255)

                                              gTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAatat                                                                                      >  1:23324/1‑140 (MQ=255)

                                                cGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTa                                                                                    <  2:389264/140‑1 (MQ=255)

                                                 ggCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTAc                                                                                   >  2:1157185/1‑140 (MQ=255)

                                                     aCGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGaa                                                                               <  2:604763/140‑1 (MQ=255)

                                                      cGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATCAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAat                                                                              <  2:657097/140‑1 (MQ=255)

                                                             ataATGCTCGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  2:1294250/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCACAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  1:1908/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTTCTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  2:2365535/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  2:248913/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  1:86412/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  2:1910979/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  2:1060859/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  1:647306/140‑1 (MQ=255)

                                                             ataATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTta                                                                       <  2:1614640/140‑1 (MQ=255)

                                                                  gatgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  <  2:1994504/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCcctcc                                                                                              <  2:1472299/111‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCcctcc                                                                                              >  1:1472299/1‑111 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:761533/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 >  1:1160187/1‑140 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:118238/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:749883/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:749781/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:1731832/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 >  2:305596/1‑140 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:427454/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataa                                                                 <  1:2111993/140‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  <  2:1004398/139‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  <  2:1298850/139‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  <  2:1295724/139‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  >  1:1117997/1‑139 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  <  2:1117997/139‑1 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  >  1:1295724/1‑139 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  >  1:1298850/1‑139 (MQ=255)

                                                                   atgGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  >  1:1004398/1‑139 (MQ=255)

                                                                     ggCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataata                                                               >  2:2028440/1‑140 (MQ=255)

                                                                     ggCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataataata                                                               >  2:2028468/1‑140 (MQ=255)

                                                                        cGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCcctcc                                                                                              >  1:1097348/1‑106 (MQ=255)

                                                                        cGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCcctcc                                                                                              >  1:2171812/1‑106 (MQ=255)

                                                                        cGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCcctcc                                                                                              <  2:2171812/106‑1 (MQ=255)

                                                                        cGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCcctcc                                                                                              <  2:1097348/106‑1 (MQ=255)

                                                                               aaaGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCa                                                     <  1:1157185/140‑1 (MQ=255)

                                                                                   gCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCt                                                 <  1:305596/140‑1 (MQ=255)

                                                                                     gTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTaa                                               >  2:2169147/1‑140 (MQ=255)

                                                                                       ggggAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  <  1:47306/119‑1 (MQ=255)

                                                                                       ggggAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTataata                                                                  >  2:47306/1‑119 (MQ=255)

                                                                                             tGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAAc                                       >  2:135883/1‑140 (MQ=255)

                                                                                             tGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAAc                                       >  2:202882/1‑140 (MQ=255)

                                                                                                       aTGAAAACTGGCAATCCCCAAAAATCAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATttatt                             <  2:2109717/140‑1 (MQ=255)

                                                                                                                             aataccaTGGACGCTTTAAGTATCGTTACTTTTTTCATATGATATCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTCATCCACCCTAACAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACt       <  1:519249/134‑1 (MQ=255)

                                                                                                                                  gATTGACGCTTTAAGTATCTTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAACAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  1:1361076/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAATTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:264841/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTAGTTTTTTAAAATGATCTCCCCGTCCTTTATTATTACTGAATATTTTTATTATAATAACCTAATCCACCCTAACTGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:1194021/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCTAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  1:1774776/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  1:1863554/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:2375152/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:1046678/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:628076/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  1:812335/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  1:1134397/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:1013020/140‑1 (MQ=255)

                                                                                                                                  gATGGACGCTTTAAGTATAGTTAATTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGtt  <  2:1046115/140‑1 (MQ=255)

CATCATCTGCATTTTGGCCGGCTTTCAACTCATGCATTTCCTGCTGGTCGGCTACGGCTTTATAATGATGGCCGATATCAAAGGCGTGGGGAATGGAGAACAAATGAAAACTGGCAATCGCCAAAAATAAGATGGACGCTTTAAGTATCGTTACTTTTTTCAAATGATCTCCCCCTCCTTTAATATTACTGAATATTTTTATAATAATACCCTAATCCACCCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTCACTTTGTT  >  NZ_CP034943/1902130‑1902399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`