| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,180,226 | A→G | 7.2% | E32E (GAA→GAG) | sspL → | small, acid‑soluble spore protein L |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,180,226 | 0 | A | G | 7.2% | 301.3 / 10.0 | 97 | E32E (GAA→GAG) | sspL | small, acid‑soluble spore protein L |
| Reads supporting (aligned to +/- strand): ref base A (51/39); new base G (4/3); total (55/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
TCGATCAATGGTCATCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGCAGG > NZ_CP034943/2180094‑2180363 | tagATCAATGGTCATCCTAATGACGATGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAagag < 2:2246706/138‑1 (MQ=255) cAATGGTCATCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCaaa < 2:1950828/140‑1 (MQ=255) cAATGGTCATCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCaaa < 1:1773441/140‑1 (MQ=255) cAATGGTCATCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCaaa < 2:382249/140‑1 (MQ=255) cAATGGTCATCATAATGACGAGTTGAACAAACATGAAAAAGAAAGATAAATGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCaaa < 2:1950837/140‑1 (MQ=255) tGGTCATCCTAATGACGATGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGATGGCAATACACATAATGACCCTATAACAGAGCTTGAAGAAAGAGCCaaaaaa < 1:1188285/140‑1 (MQ=255) gTCATCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAg < 1:813589/140‑1 (MQ=255) tCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAAt > 2:617742/1‑140 (MQ=255) tAATGACGAGGTGAACAAACATGAAAAAGAAAGATTAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACa < 2:650435/140‑1 (MQ=255) aaTGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAACACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACaa < 2:583626/140‑1 (MQ=255) aaTGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACaa < 2:1774419/140‑1 (MQ=255) aaTGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACaa < 2:193579/140‑1 (MQ=255) aaTGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACaa < 2:1570290/140‑1 (MQ=255) aaTGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACaa < 2:37935/140‑1 (MQ=255) aaTGACGAGGTGAACAAAAATGAAAAAGAAATATAAAGGCCGGCTGACCGTCTGTGTTACTCCTCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGGTTGAAGAAAGAGCCAAAAAAAGCAATACaa < 2:1680433/140‑1 (MQ=255) aCGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACg < 1:881276/140‑1 (MQ=255) aCGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACg < 1:1599049/140‑1 (MQ=255) aGGTGAACTAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAAGCAATACAAAACGCTa > 1:556730/1‑140 (MQ=255) aGGTGAACTAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAAGCAATACAAAACGCTa > 1:1391420/1‑140 (MQ=255) aGGTGAACTAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAAGCAATACAAAACGCTa > 1:1391497/1‑140 (MQ=255) aGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTa > 2:281554/1‑140 (MQ=255) aGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTa > 2:274255/1‑140 (MQ=255) aGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTa > 2:1218087/1‑140 (MQ=255) aGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGAACGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTa > 2:1084762/1‑140 (MQ=255) acaaacaTGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGagaag < 1:1443525/140‑1 (MQ=255) aTGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAg > 1:546010/1‑113 (MQ=255) aTGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAg < 2:546010/113‑1 (MQ=255) tGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTaca > 2:223124/1‑140 (MQ=255) tGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTaca > 1:2028805/1‑140 (MQ=255) tGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTaca > 2:2394731/1‑140 (MQ=255) tGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTaca > 2:1793572/1‑140 (MQ=255) tGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTaaa > 2:2394062/1‑138 (MQ=255) gAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTacac < 1:1628492/140‑1 (MQ=255) gAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAAGCAATACAAAACGCTAGAGAGGATCTaaac < 2:1391497/140‑1 (MQ=255) gAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAAGCAATACAAAACGCTAGAGAGGATCTaaac < 2:1391420/140‑1 (MQ=255) gAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAAGCAATACAAAACGCTAGAGAGGATCTaaac < 2:556730/140‑1 (MQ=255) aaagaaagATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGAt < 2:550330/140‑1 (MQ=255) aaagaaagATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGAt < 1:617742/140‑1 (MQ=255) aagaaagaTAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATCCAAAACGCTAGAGAAGATCTACACGAtc < 1:894280/140‑1 (MQ=255) aagaTAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGAtctctc > 2:709260/1‑140 (MQ=255) aagaTAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGAtctctc > 2:709686/1‑140 (MQ=255) cggCCGGCTGACCGGCGGTGGTACTCCGCAACGCGATCGGGAAGGCAACACACAGAATGACCCTACCCCACCGCGCGAAGAAAGAGCCAAAAAAAGCAATACAACCCGCTAGAGAAGATCTACACGATCTCTCTAGCGtt < 2:2189941/139‑1 (MQ=255) ccGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGACGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAACACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAg < 1:1021063/140‑1 (MQ=255) gCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCtt > 1:1610843/1‑140 (MQ=255) gCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCtt > 1:1293697/1‑140 (MQ=255) cTGACCGGCGGTGTTACTCCGCAAGGCGACCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAGGAGAGAGCAAAAAAAGGCACTACAAAACGCTAGAGAGGATCTAAACGATCTCTCTAGCGTTCAGCttt > 2:1082915/1‑140 (MQ=255) aCCGGCGGTGGTACTCCTCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAACAAAGCACTACAAAACGCTAGAGAAGATCTACACGATCTCTATAGCGTTCAGCTTTTCa < 1:1004471/140‑1 (MQ=255) cggcggTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAg > 1:501249/1‑140 (MQ=255) gggggtACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg < 1:1091786/135‑1 (MQ=255) ggTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg < 1:2167163/140‑1 (MQ=255) ggTGTTACTCCGCAAGGCGATCTGGAACGCCATAAACATAATGACCCTAACCCAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACCCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg < 1:966333/140‑1 (MQ=255) ttACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAACACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCt < 2:824832/140‑1 (MQ=255) aCTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCa < 1:1218087/140‑1 (MQ=255) cTCCGCAAGGCGATCGGGAAGGAAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATAAAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCaa < 2:1440443/140‑1 (MQ=255) ccGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAAtt > 1:2367401/1‑140 (MQ=255) cAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCt > 1:1832268/1‑140 (MQ=255) aGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCttt > 2:682346/1‑140 (MQ=255) ggCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTc > 2:2411824/1‑110 (MQ=255) ggCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTc < 1:2411824/110‑1 (MQ=255) tCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGACGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTtg > 1:438463/1‑140 (MQ=255) tCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTtg > 1:452826/1‑140 (MQ=255) tCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGAGCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTtg > 1:222148/1‑140 (MQ=255) tGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTtggt < 1:1462862/140‑1 (MQ=255) aaTACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGa < 1:1727929/140‑1 (MQ=255) aaTACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGa > 1:2068410/1‑140 (MQ=255) aaTACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGa > 1:293670/1‑140 (MQ=255) aaTACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGa > 1:2337243/1‑140 (MQ=255) tACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAg > 1:2399558/1‑140 (MQ=255) aaTGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCa > 2:1775380/1‑140 (MQ=255) aaTGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCa > 2:1030388/1‑140 (MQ=255) cccTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAgccgc > 2:1942834/1‑140 (MQ=255) cccTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAgccgc > 2:1822408/1‑140 (MQ=255) cccTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAgccgc > 2:1527323/1‑140 (MQ=255) ccTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAgccgcc > 2:1711122/1‑140 (MQ=255) ccTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAgccgcc > 1:1316440/1‑140 (MQ=255) ccTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAgccgcc > 1:474924/1‑140 (MQ=255) tAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATGTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTGCTGTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTg > 1:1126783/1‑140 (MQ=255) tAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTTGTGGCGGCGAAGCATGTCAGCCGCCTg > 2:1654769/1‑140 (MQ=255) aaaaCAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCATGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCAGGGCAGCCGCCTGc > 2:393277/1‑140 (MQ=255) aaCAGAGCTTGAAGAAAGAGCCAAACAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTGTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTc < 2:274165/140‑1 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg < 2:1496616/85‑1 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg < 2:388777/85‑1 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg > 1:1496616/1‑85 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg > 1:1605202/1‑85 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg > 1:388777/1‑85 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATg < 2:1605202/85‑1 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:685812/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:843217/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:682231/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 1:1966026/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 1:2093596/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:2179898/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:204408/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:1773192/1‑140 (MQ=255) agCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCAttt > 2:153343/1‑140 (MQ=255) cTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGTAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGc < 2:1016812/140‑1 (MQ=255) gaagaaAGAGCCAAACAAAGCACTACAAAACGCTAGAGAAGAACTACCCGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGCAgg < 1:591959/140‑1 (MQ=255) gaagaaAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGCAgg < 1:1463112/140‑1 (MQ=255) gaagaaAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGCAgg < 1:2164029/140‑1 (MQ=255) gaagaaAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGCAgg < 1:682346/140‑1 (MQ=255) | TCGATCAATGGTCATCCTAATGACGAGGTGAACAAACATGAAAAAGAAAGATAAAGGCCGGCTGACCGGCGGTGTTACTCCGCAAGGCGATCTGGAAGGCAATACACATAATGACCCTAAAACAGAGCTTGAAGAAAGAGCCAAAAAAAGCAATACAAAACGCTAGAGAAGATCTACACGATCTCTCTAGCGTTCAGCTTTTCAAGCATGCGCTCAATTCCTTTGATTTGGTGGCGGCGAAGCATGTCAGCCGCCTGCTCCATTTGCAGG > NZ_CP034943/2180094‑2180363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |