| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,611,711 | A→G | 5.4% | intergenic (‑330/+4) | alaS ← / ← EO946_RS13520 | alanine‑‑tRNA ligase/AI‑2E family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,611,711 | 0 | A | G | 5.4% | 470.4 / 11.6 | 147 | intergenic (‑330/+4) | alaS/EO946_RS13520 | alanine‑‑tRNA ligase/AI‑2E family transporter |
| Reads supporting (aligned to +/- strand): ref base A (82/56); new base G (4/4); total (87/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.36e-01 | |||||||||||
Only 100 of 155 total aligned reads displayed.
GATTAGCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAATGACGACAGG > NZ_CP034943/2611573‑2611849 | gATTAGCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCaa < 2:350396/140‑1 (MQ=255)gATTAGCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCaa < 2:1905372/140‑1 (MQ=255)gATTAGCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCaa < 2:1441516/140‑1 (MQ=255)gATTAGCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCaa < 1:1862832/140‑1 (MQ=255)gATTAGCTTCCTCCGATCTTCTGAGAAAGCTCCTGTCAGCTTCCGGAGCTTCTCACTTTCACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCaa < 1:1056679/140‑1 (MQ=255) gCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCa < 2:90335/140‑1 (MQ=255) gCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCa < 1:2084120/140‑1 (MQ=255) tcctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATg < 2:2118034/140‑1 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACACGCTGCACGCCAATGTCAATGCt > 2:1471129/1‑140 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCt < 2:387667/140‑1 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCt < 1:1626910/140‑1 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCt < 2:2309972/140‑1 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCt > 2:2176714/1‑140 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCt > 2:1777881/1‑140 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAAGGCt < 1:1447670/140‑1 (MQ=255) ctccGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCACATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAACCTGCACGCCAATGTCAATGCt > 2:316870/1‑140 (MQ=255) ccTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTaaaaaag > 2:416342/1‑139 (MQ=255) tttCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATgg < 2:1557713/140‑1 (MQ=255) aCGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGatcatcatc > 1:1017227/1‑140 (MQ=255) aCGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGatcatcatc < 2:1705953/140‑1 (MQ=255) aCGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGatcatcatc > 1:1109343/1‑140 (MQ=255) cTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACtttt > 2:302353/1‑140 (MQ=255) tttAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAATCGGCACGCCGATGTCAATGCTCCGTCCTCATCCGCAAAAAATGGATCATCATTACTTTTAAAACAGc > 2:1100345/1‑140 (MQ=255) tttAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGc > 2:511856/1‑140 (MQ=255) tAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCgg > 1:336193/1‑140 (MQ=255) cagaGGGCGTCGGCGTACTCAGATCCGTCACTCTAGATTCTTATGTATTCTTCGTGATTTTATAGAGAATCTGGACGCCAATGTCATTGCGCCGTCCTCATCCGTATAAAATGGATCATCATCACTTTTAAAACAGCGGt < 2:2188639/137‑1 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATTTATTCGACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCTCAg > 1:190764/1‑140 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGatcatcatc < 2:11956/118‑1 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGatcatcatc > 1:11956/1‑118 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGatcatcatc > 1:389445/1‑118 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAg > 1:2216667/1‑140 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAg > 2:1483270/1‑140 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAg > 1:1373512/1‑140 (MQ=255) ggCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAg > 1:1028521/1‑140 (MQ=255) cTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACACGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGa > 2:763792/1‑140 (MQ=255) cTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGa < 2:2151345/140‑1 (MQ=255) cTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGa > 1:105012/1‑140 (MQ=255) cTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGa < 2:577971/140‑1 (MQ=255) cTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCGGCACGCCGATGTCAATGCTCCGTCCTCATCCGCAAAAAATGGATCATCATTACTTTTAAAACAGCCGTCGCAGGa > 2:499552/1‑140 (MQ=255) cTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCGGCACGCCGATGTCAATGCTCCGTCCTCATCCGCAAAAAATGGATCATCATTACTTTTAAAACAGCCGTCGCAGGa > 2:499582/1‑140 (MQ=255) cTTCGGCGTACTCAGATACGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGa < 2:2120481/140‑1 (MQ=255) ttCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATGATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGaa < 2:261992/140‑1 (MQ=255) ggCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGCAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAg > 2:184227/1‑140 (MQ=255) cTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGaa > 2:168887/1‑140 (MQ=255) cTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGaa > 2:2053933/1‑140 (MQ=255) atgcGTCACTCGAGATTCGTATGTATTCTACGAGAACTTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAACATGGATCCTCATCCCTTTTAAAACAGCGGTCGCAGGAACAGCCCGAATCAtt > 2:139273/4‑140 (MQ=255) aTCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCAtt > 2:2309892/1‑140 (MQ=255) aTCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCAtt > 2:2287101/1‑140 (MQ=255) gTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCaa < 1:1136677/140‑1 (MQ=255) tCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCCATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAAc > 2:600611/1‑140 (MQ=255) tCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAAc > 2:2048254/1‑140 (MQ=255) tCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAAc > 2:211054/1‑140 (MQ=255) tCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAAc > 2:2186329/1‑140 (MQ=255) aCTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGa < 1:2053933/140‑1 (MQ=255) aCTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGa < 1:168887/140‑1 (MQ=255) tCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGAtt < 2:1713820/140‑1 (MQ=255) aTTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGc < 1:2007531/140‑1 (MQ=255) aTTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGc < 1:1708737/140‑1 (MQ=255) aTTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGc < 2:2418653/140‑1 (MQ=255) cGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACCGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAg < 2:1333461/140‑1 (MQ=255) cGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAg < 2:110176/140‑1 (MQ=255) tACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGa < 2:73189/106‑1 (MQ=255) tACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGa > 1:73189/1‑106 (MQ=255) tACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGa < 2:1194195/106‑1 (MQ=255) tACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCgg > 1:2120140/1‑140 (MQ=255) tACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCgg > 1:2333561/1‑140 (MQ=255) tACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGAGTCCCGCAAGCTCTCCTCCgg > 2:2272359/1‑140 (MQ=255) aCGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGc < 2:2333561/140‑1 (MQ=255) aCGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGc < 2:2120140/140‑1 (MQ=255) cGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGc < 2:2175520/124‑1 (MQ=255) cGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGc > 1:2175520/1‑124 (MQ=255) cGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCa > 1:917471/1‑140 (MQ=255) cGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCa > 1:2385989/1‑140 (MQ=255) agaAATTCTAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGAGTCCCGCAAGCTCTCCTCCGGCAAg < 2:826864/140‑1 (MQ=255) agaAATTATAGACCAGCGGCACGCCAATGTCAATGCTCCGTCCTCCTCCGTAAAAAATGGATCATCATCACTTTTAAACCAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAg < 1:416342/140‑1 (MQ=255) agaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAg < 2:171146/140‑1 (MQ=255) agaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAg < 1:639241/140‑1 (MQ=255) agaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAg < 2:1268302/140‑1 (MQ=255) agaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAg < 1:933622/140‑1 (MQ=255) agaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAg < 1:766207/140‑1 (MQ=255) agaAATTATAGACAAGCGGCACGCCGATGTCAATGCTCCGTCCTCATCCGCAAAAAATGGATCATCATTACTTTTAAAACAGCCGTCGCAGGAACAGCCAGAATCATCCCGACGATACCCGCAAGCTCCCCTCCGGCAAg < 1:499552/140‑1 (MQ=255) agaAATTATAGACAAGCGGCACGCCGATGTCAATGCTCCGTCCTCATCCGCAAAAAATGGATCATCATTACTTTTAAAACAGCCGTCGCAGGAACAGCCAGAATCATCCCGACGATACCCGCAAGCTCCCCTCCGGCAAg < 1:499582/140‑1 (MQ=255) gaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGc < 2:602836/140‑1 (MQ=255) gaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGc > 1:2034189/1‑140 (MQ=255) gaAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGc < 2:1990709/140‑1 (MQ=255) caaaTTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGc < 2:1297700/139‑1 (MQ=255) tataGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGc < 1:2176714/140‑1 (MQ=255) tataGACAAGCGGCACGCCGATGTCAATGCTCCGTCCTCATCCGCAAAAAATGGATCATCATTACTTTTAAAACAGCCGTCGCAGGAACAGCCAGAATCATCCCGACGATACCCGCAAGCTCCCCTCCGGCAAGGAGTGc < 1:235341/140‑1 (MQ=255) gCTGCACGCCAATGTCAATGCTCCTTCCTCAGCCGTAAAACATGGATCTTCATCAGTTGGACAACAGCGGTCGCAGGAACAGCCTGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCCAGCCGTGCAAGCATAAt > 1:2347536/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCATGCAGTGCAAGCATAAt > 1:1363753/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGc < 2:678049/131‑1 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGc > 1:678049/1‑131 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAAt > 1:1212006/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAAt > 2:587218/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAAt > 1:2411394/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAAt > 1:1564331/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAAt > 1:844014/1‑140 (MQ=255) gCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAAt > 2:1559026/1‑140 (MQ=255) cAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAATGACGACAgg > 2:406570/1‑140 (MQ=255) cAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAATGACGACAgg > 2:1972358/1‑140 (MQ=255) | GATTAGCTTCCTCCGATCTTCTGATAAAGCTCCTTTCAGCTTACGGAGCTTCTCTCTTTAACAGGGCTTCGGCGTACTCAGATCCGTCACTCGAGATTCGTATGTATTCTACGAGAAATTATAGACAAGCTGCACGCCAATGTCAATGCTCCGTCCTCATCCGTAAAAAATGGATCATCATCACTTTTAAAACAGCGGTCGCAGGAACAGCCAGAATCATTCCAACGATTCCCGCAAGCTCTCCTCCGGCAAGCAGTGCAAGCATAATGACGACAGG > NZ_CP034943/2611573‑2611849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |