| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,827,922 | T→C | 7.0% | R329R (CGA→CGG) | thiI ← | tRNA 4‑thiouridine(8) synthase ThiI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,827,922 | 0 | T | C | 7.0% | 352.2 / 12.1 | 114 | R329R (CGA→CGG) | thiI | tRNA 4‑thiouridine(8) synthase ThiI |
| Reads supporting (aligned to +/- strand): ref base T (43/62); new base C (4/4); total (48/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
TACGGCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTCCCCCGTAAT > NZ_CP034943/2827788‑2828056 | taCGGCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTGATATGTGCCGAGGTCTCGTGa > 2:1384757/1‑140 (MQ=255)taCGGCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGa > 2:950280/1‑140 (MQ=255)taCGGCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCGCGTgt > 2:1573880/1‑139 (MQ=255) ggCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGAttt > 1:789514/1‑140 (MQ=255) ggCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATGTTTTCTTTGTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGAttt > 1:541065/1‑140 (MQ=255) gCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATCTCTCGTGAtttt > 2:1773952/1‑140 (MQ=255) aaaTCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCgat < 2:2046916/140‑1 (MQ=255) aaaTCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCgat < 2:1564867/140‑1 (MQ=255) aaTCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGTCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCgatg > 2:204596/1‑140 (MQ=255) aaTCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCgatg > 2:852888/1‑140 (MQ=255) aaTCAACAAAGCTTTCAAAGTGTTCGATTTTATCTTTTTTAGGGCGTGTTTTCTGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCgatg > 2:2310969/1‑140 (MQ=255) caacaaAGCTTTCAACGTGTTCGATTTTTTCTTTTTTAGGGCGTGATTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAtt < 2:1117162/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCGGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 1:2287193/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 1:1525595/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 1:1688740/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 2:774954/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 1:2175220/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 2:628937/140‑1 (MQ=255) aacaaAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGAttt < 1:590071/140‑1 (MQ=255) aacaaAGATTTCAAAGTGTTCGTTTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTTGCTGAGTAAAGATCTTTCAGCAGTATTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGTTTTTTCGATGAttt < 1:2039067/140‑1 (MQ=255) aGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGtt < 2:901529/140‑1 (MQ=255) gtTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCg > 2:615560/1‑140 (MQ=255) ttCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGTCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGATGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCTATGATTTCTTGTTTATCCATggata > 2:925124/1‑137 (MQ=255) ttCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCTATGATTTCTGTTTTATCAATGTCGa > 1:246956/1‑140 (MQ=255) ttAGGGCGTGTTTTCGGGCTTGGCGGTGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATACTTGTCTCATATGTGCCAATTTCCCGTGATTTTTCGATGATTTCTGTTTTGTCCATGGCGATTAGCGGACGCAAAAt < 2:2231170/140‑1 (MQ=255) ttAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAt < 2:1122449/140‑1 (MQ=255) ttAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAt < 1:1102452/140‑1 (MQ=255) ttAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAt < 2:1927845/140‑1 (MQ=255) ttAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAt < 1:1104167/140‑1 (MQ=255) ttAGGGCGTGTTGTCGGTCTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAt < 2:1926878/140‑1 (MQ=255) ttAGGGCGTGTGTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAt < 1:1102577/140‑1 (MQ=255) tgggCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCg < 2:1281368/139‑1 (MQ=255) cGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCa < 1:2148712/140‑1 (MQ=255) cGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCa < 1:2030777/140‑1 (MQ=255) cGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCa < 1:2003758/140‑1 (MQ=255) cGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCa < 1:1266703/140‑1 (MQ=255) ggACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCAc < 1:615560/140‑1 (MQ=255) ggACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCAc < 2:204579/140‑1 (MQ=255) ggACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCAc < 2:2174526/140‑1 (MQ=255) tGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCAt > 1:109486/1‑140 (MQ=255) tGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCAt < 2:2332940/140‑1 (MQ=255) tGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCAt < 2:2332986/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 1:66062/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 2:1985002/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 1:1685837/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 1:852888/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 1:1747982/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 2:1370403/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 1:2094505/140‑1 (MQ=255) ggcgTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAAt < 2:1370377/140‑1 (MQ=255) gATCGTGCAGGAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACa < 2:1586783/140‑1 (MQ=255) gATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACa < 2:1000298/140‑1 (MQ=255) aTCGTGCAGCAGTCTTCAAAAGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACAt < 2:2095928/140‑1 (MQ=255) gTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGCTTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGAGGTCACCGCATTAATCGACTACATGCt > 1:2432209/1‑140 (MQ=255) cTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGtt < 1:1305539/140‑1 (MQ=255) ttCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGttt > 2:739814/1‑140 (MQ=255) ttCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGttt > 2:1225709/1‑140 (MQ=255) ttCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGttt > 1:232356/1‑140 (MQ=255) ttCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGttt > 1:2390799/1‑140 (MQ=255) ttCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGttt > 2:1796670/1‑140 (MQ=255) aaCGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCt < 2:1816204/140‑1 (MQ=255) aaCGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCt < 2:2184324/140‑1 (MQ=255) aaCGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCt < 2:109486/140‑1 (MQ=255) aaCGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCt < 1:1243918/140‑1 (MQ=255) aaCGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCt < 1:1979111/140‑1 (MQ=255) gCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCt > 2:70568/1‑140 (MQ=255) gCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCt > 2:2258180/1‑140 (MQ=255) cTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTa > 1:7621/1‑140 (MQ=255) tGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTAc < 1:1505251/140‑1 (MQ=255) tGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTAc < 1:785304/140‑1 (MQ=255) tGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTAc < 2:214729/140‑1 (MQ=255) tGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTAc < 2:2204669/140‑1 (MQ=255) tGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTAc < 1:235783/140‑1 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:1563888/1‑140 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:2094463/1‑140 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:2340860/1‑140 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:547196/1‑140 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:55332/1‑140 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:1089957/1‑140 (MQ=255) gTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACACGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAg > 1:2156647/1‑140 (MQ=255) tcATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCt < 1:1869805/140‑1 (MQ=255) tcATATGTGCCAATTTCCCGTGATTTTTCGATGATTTCTGTTTTGTCCATGGCGATTAGCGGACGCAAAATCGGTGTTGACGTCACCGCATTaa > 1:589598/1‑94 (MQ=255) tcATATGTGCCAATTTCCCGTGATTTTTCGATGATTTCTGTTTTGTCCATGGCGATTAGCGGACGCAAAATCGGTGTTGACGTCACCGCATTaa < 2:589598/94‑1 (MQ=255) atatGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCttt > 2:922046/1‑140 (MQ=255) atatGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCttt > 2:397372/1‑140 (MQ=255) atatGTGCCGATTTCTCGTGATTTTTCGATGATTTCGGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCttt > 2:963491/1‑140 (MQ=255) atatGTGCCGATGTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCttt < 2:393603/140‑1 (MQ=255) tatGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTc < 1:1961975/140‑1 (MQ=255) tatGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTc < 1:1846187/140‑1 (MQ=255) tatGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTc < 1:945585/140‑1 (MQ=255) tatGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTc < 1:1118890/140‑1 (MQ=255) tgCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTccccc > 2:1656692/1‑140 (MQ=255) tgCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACATGACCAAGGCTTTccccc > 2:1656216/1‑140 (MQ=255) ccaaTTTCCCGTGATTTTTCGATGATTTCTGTTTTGTCCATGGCGATTAGCGGACGCAAAATCGGTGTTGACGTCACCGCATTAATTGCATAc < 2:357620/90‑1 (MQ=255) ccGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTCCCCCGt > 2:920628/1‑140 (MQ=255) aTTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTCCCCCGTAat > 1:317987/1‑140 (MQ=255) aTTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTCCCCCGTAat > 2:896688/1‑140 (MQ=255) aTTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAAGCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTCCCCCGTAat > 1:883499/1‑140 (MQ=255) ttCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCttt < 1:2299753/128‑1 (MQ=255) ttCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCttt > 2:2299753/1‑128 (MQ=255) | TACGGCTCAAAATCAACAAAGCTTTCAAAGTGTTCGATTTTTTCTTTTTTAGGGCGTGTTTTCGGACTTGGCGGCGTAAAGATCGTGCAGCAGTCTTCAAACGGCTGAATGCTTGTCTCATATGTGCCGATTTCTCGTGATTTTTCGATGATTTCTGTTTTATCCATGGCGATTAACGGACGCAAAATCGGTGTTGACGTCACCGCATTAATCGCATACATGCTTTCAAGCGTTTGGCTCGCTACCTGACCAAGGCTTTCCCCCGTAAT > NZ_CP034943/2827788‑2828056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |