| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,523,124 | A→T | 5.4% | F133Y (TTT→TAT) | EO946_RS18120 ← | CotH kinase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,523,124 | 0 | A | T | 5.4% | 408.7 / 9.9 | 124 | F133Y (TTT→TAT) | EO946_RS18120 | CotH kinase family protein |
| Reads supporting (aligned to +/- strand): ref base A (64/52); new base T (3/4); total (67/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 135 total aligned reads displayed.
TCCCAGTCTTCTTTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAG > NZ_CP034943/3522987‑3523262 | tCCCAGTCTTCTTTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTCAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAAt > 2:1520952/1‑140 (MQ=255)tCCCAGTCTTCTTTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAAt > 1:1701860/1‑140 (MQ=255) aGTCTTCTTTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAACTTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCag > 2:334315/1‑139 (MQ=255) aGTCTTCTTTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCAt > 1:1417332/1‑140 (MQ=255) cttTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACgg > 2:1052435/1‑140 (MQ=255) cttTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACgg > 1:69351/1‑140 (MQ=255) cttTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACgg > 2:1601746/1‑140 (MQ=255) tCATATCCAAGCTCACGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttc < 1:1548934/140‑1 (MQ=255) tCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCTGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttc < 1:320499/140‑1 (MQ=255) atatCCAAGCTCACGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAtgcaa > 1:2061324/1‑140 (MQ=255) atCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagt > 2:1171700/1‑140 (MQ=255) atCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagt > 1:1956934/1‑140 (MQ=255) atCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagt > 1:884644/1‑140 (MQ=255) tCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagtt < 2:334939/140‑1 (MQ=255) tCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagtt < 2:453205/140‑1 (MQ=255) tCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagtt < 2:453403/140‑1 (MQ=255) tCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagtt < 1:923951/140‑1 (MQ=255) tCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagtt < 1:18737/140‑1 (MQ=255) aGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGAttcaagttcaag > 1:1594134/1‑140 (MQ=255) aaGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa < 2:2208216/140‑1 (MQ=255) aaGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa < 2:1345494/140‑1 (MQ=255) aaGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa < 1:186439/140‑1 (MQ=255) aaGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTA‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa < 1:1116979/140‑1 (MQ=255) aGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAAc > 2:1754515/1‑140 (MQ=255) aGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAAc > 2:1838639/1‑140 (MQ=255) aGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAAc > 2:466121/1‑140 (MQ=255) gTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGACATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTc > 1:1358020/1‑140 (MQ=255) tCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTCTTTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa > 1:1153019/1‑133 (MQ=255) tCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa > 1:543600/1‑132 (MQ=255) tCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATaaa < 2:543600/132‑1 (MQ=255) cGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCAttct < 2:1012001/140‑1 (MQ=255) cGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCAttct < 2:1012006/140‑1 (MQ=255) ctgtCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCAtt < 1:1726113/137‑1 (MQ=255) cTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCAtt < 1:720688/140‑1 (MQ=255) ctCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGAGAAACCCCGTCATTCGTCCCATTCACCTTTa > 1:1555609/2‑140 (MQ=255) aTCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTa > 1:137247/1‑140 (MQ=255) aTCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTa > 1:137254/1‑140 (MQ=255) aTCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTa < 1:1171700/140‑1 (MQ=255) aTCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTa > 1:1313970/1‑140 (MQ=255) cGCTCATCAGATATAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGACAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTaaa < 2:52224/140‑1 (MQ=255) cGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCCCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTaaa < 2:1601474/140‑1 (MQ=255) cTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTaaaaa > 1:1526643/1‑140 (MQ=255) atcaGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAacac > 1:543941/1‑140 (MQ=255) agagaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAAct > 1:2084740/1‑140 (MQ=255) gagaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAActc < 1:658591/140‑1 (MQ=255) gagaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAActc < 2:1358020/140‑1 (MQ=255) gagaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAActc < 1:2234142/140‑1 (MQ=255) gaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTg > 1:1044494/1‑140 (MQ=255) gaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTg > 1:1439252/1‑140 (MQ=255) gaAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTg > 1:598714/1‑140 (MQ=255) catcatcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGAc > 2:1079629/1‑140 (MQ=255) catcatcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGAc > 2:1637854/1‑140 (MQ=255) atcatcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACa > 1:1955059/1‑140 (MQ=255) tcatcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTACGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTATTCCCATTCACCGTTAAAAACACAAACTCTGCCTTTGGAGACac > 2:1246973/1‑139 (MQ=255) cctcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTGTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCAGTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc < 2:1576026/138‑1 (MQ=255) catcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc < 2:897972/140‑1 (MQ=255) catcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc < 1:2373479/140‑1 (MQ=255) catcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc < 2:120482/140‑1 (MQ=255) catcaACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCAGTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc < 2:69323/140‑1 (MQ=255) catcaACCGCCTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTGTCGCTAAATAACATTCAGCGACGGAGTCAAGTTCAAGATAAACCCCTGCATTCTTCCCAGTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc < 1:982083/140‑1 (MQ=255) aaCCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTcc > 1:1207868/1‑140 (MQ=255) cgcgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCaa > 2:925954/1‑140 (MQ=255) gcgTAAAAAACCGCCCCGTCCGCAAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATGCGTCCCATGCACCTTTCGAAACACAAACTCGGCCTTTGGAGACAGCGTCCCAAg > 1:2146540/1‑140 (MQ=255) cgTAAAAAACCGCGCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTGCCCATTCAGCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGc > 1:2096683/1‑140 (MQ=255) cgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCCCCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGc > 2:2353889/1‑140 (MQ=255) cgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAATAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGc > 1:1117669/1‑140 (MQ=255) cgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGc > 1:9477/1‑140 (MQ=255) cgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGc > 2:2088500/1‑140 (MQ=255) cgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGc > 1:2029106/1‑140 (MQ=255) cgTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGGTCAAGATAAACCCCTTCATTCTTCCCATTCACCGTTAAAAACACACACTCTGCCTTTGGCGACCGCGTCCCAAGc > 2:2352797/1‑140 (MQ=255) catAAAAAATCGCGCCATCAGCCAGCTTC‑CTTTTCGCCAAATAATATTCATCTACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCATCTTTACAAACGCAAACTCTGCCTTTGgaga > 1:886165/3‑127 (MQ=255) catAAAAAATCGCGCCATCAGCCAGCTTC‑CTTTTCGCCAAATAATATTCATCTACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCATCTTTACAAACGCAAACTCTGCCTTTGgaga < 2:886165/125‑1 (MQ=255) catAAAAAATCGCGCCATCAGCCAGCTTC‑CTTTTCGCCAAATAATATTCATCTACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCATCTTTACAAACGCAAACTCTGCCTTTGgaga > 1:886204/3‑127 (MQ=255) catAAAAAATCGCGCCATCAGCCAGCTTC‑CTTTTCGCCAAATAATATTCATCTACGGATTCAAGTACAAGATAAACCCCTTCATTCTTCCCATTCATCTTTACAAACGCAAACTCTGCCTTTGgaga > 1:2112617/3‑127 (MQ=255) tAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAACACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGctc < 1:635221/140‑1 (MQ=255) tAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGctc < 1:1926693/140‑1 (MQ=255) tAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGctc < 1:327100/140‑1 (MQ=255) tAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCGAAATAAAATTCATCGACGGATTCAAGTTCAAGATACACCCCTTCATTCTTCCCATTCAGCTTTAAGAACACAAACTCTGCCGTTGGCGACAGCGTCCCCAGctc > 1:2315093/1‑140 (MQ=255) tAAAAAACCGCCCCGTCCGCCAACTTC‑CAGTTCGCTAAATCATATTCATCGACGGATTCAAGTTCAATATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGctc < 1:662885/140‑1 (MQ=255) cccGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAAt > 2:348758/1‑140 (MQ=255) cccGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAAt > 2:2160271/1‑140 (MQ=255) cccGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAAt > 2:205151/1‑140 (MQ=255) cccGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAAt > 2:1561171/1‑140 (MQ=255) cGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATcc < 2:1526643/140‑1 (MQ=255) ccGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAAt < 2:2341691/140‑1 (MQ=255) ttCGCTAAATAAAATTCATCGACGTATTCAAGTTCAAGATAAACCCATTCATTCTTCCCATTCACCTTTAAAAACACAAACTATTCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTtct < 1:2279848/140‑1 (MQ=255) ttCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTtct < 1:441150/140‑1 (MQ=255) ttCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTtct < 1:805793/140‑1 (MQ=255) ttCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTtct < 2:69351/140‑1 (MQ=255) ttCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCGTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTtct < 2:1361620/140‑1 (MQ=255) ttCGATATATCAAATTCCTCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTACCATTCACCTTTAAAAACACACACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTtct < 2:2146540/140‑1 (MQ=255) cTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGc > 1:489041/1‑95 (MQ=255) cTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAAGTTGTTTCtcatc > 2:1911895/1‑140 (MQ=255) taaaATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGa < 1:1700095/140‑1 (MQ=255) aaaTTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAg < 1:122481/140‑1 (MQ=255) aaaTTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAg < 2:1439252/140‑1 (MQ=255) aaaTTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAg < 2:1564177/140‑1 (MQ=255) aaaTTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAg < 1:1160712/140‑1 (MQ=255) aaaTTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAg < 1:925954/140‑1 (MQ=255) aaaTTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCGTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAg < 2:598714/140‑1 (MQ=255) | TCCCAGTCTTCTTTTCATATCCAAGCTCAAGCGACGTCTTCGTTTCCCTTTCCAAATCGCTCATCAGAGAGAAATTAGCATCATCATCAACCGCGTAAAAAACCGCCCCGTCCGCCAACTTC‑TTTTTCGCTAAATAAAATTCATCGACGGATTCAAGTTCAAGATAAACCCCTTCATTCTTCCCATTCACCTTTAAAAACACAAACTCTGCCTTTGGAGACAGCGTCCCAAGCTCTGAGAAAAAATCCAATGACAATTTGTTTCTCATCATGGAAG > NZ_CP034943/3522987‑3523262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |