| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 765,087 | A→G | 5.3% | S267G (AGC→GGC) | lplD → | alpha‑galacturonidase LplD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 765,087 | 0 | A | G | 5.3% | 612.8 / 15.8 | 188 | S267G (AGC→GGC) | lplD | alpha‑galacturonidase LplD |
| Reads supporting (aligned to +/- strand): ref base A (91/87); new base G (5/5); total (96/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
CATATTGACCTGCTGCCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACGAGAAACGAAAAGAAA > NZ_CP034943/764949‑765225 | cATATTGACCTGCTGCCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAg > 2:881358/1‑140 (MQ=255)cATATTGACCTGCTGCCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAg > 2:1185855/1‑140 (MQ=255) ttGACCTGCTGCCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGcc < 1:2399677/140‑1 (MQ=255) aCCTGCTGCCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATc > 2:1626146/1‑140 (MQ=255) tgctgcCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATcccc > 2:712728/1‑140 (MQ=255) ctgcCTATATTCCATGGATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGc > 1:2263760/1‑140 (MQ=255) ctgcCTATATTCCATGAATTCAGCTCGCATTCTGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGGGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGc > 1:1052602/1‑140 (MQ=255) ctgcCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGc > 1:104243/1‑140 (MQ=255) ctgcCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGc > 1:1137025/1‑140 (MQ=255) ctgcCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGc > 2:1773091/1‑140 (MQ=255) ctgcCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGc > 2:1731856/1‑140 (MQ=255) gcCTATATTCCATGAATTCAGCTCGCATTATGGAGACTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTg < 1:1779588/140‑1 (MQ=255) gcCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTg < 1:221265/140‑1 (MQ=255) ccTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGc < 1:2377031/140‑1 (MQ=255) tCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGAc < 2:1747158/140‑1 (MQ=255) tCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGAc < 2:1137277/140‑1 (MQ=255) ctGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAgg > 2:1311065/2‑140 (MQ=255) aTGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAgg > 2:442883/1‑140 (MQ=255) aTGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAgg > 2:2359073/1‑140 (MQ=255) aTGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAgg > 2:534811/1‑140 (MQ=255) tGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGc > 2:485555/1‑140 (MQ=255) aGCTCGCATTATGGAGTATCCGGATCTGAGCTAGAGGGTGTAAGCTGGAGGGTCAGTGTGTTTCGTTCGGCACACCGTGGTGCGTTTGTTTTATTTGACATGTATAGCGCCTTCCCCGCTGCGGGTGACAGGCATCTGGc < 2:1222314/140‑1 (MQ=255) aGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGc < 2:1119128/140‑1 (MQ=255) aGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGc > 1:1195315/1‑140 (MQ=255) gCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCa < 2:1003598/140‑1 (MQ=255) gCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCa < 1:31418/140‑1 (MQ=255) ggAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATACCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTcc < 2:349452/140‑1 (MQ=255) aaTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTg > 1:1952154/1‑105 (MQ=255) aaTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTg < 2:1952154/105‑1 (MQ=255) aaTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGc < 1:363822/124‑1 (MQ=255) aaTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGc > 2:363822/1‑124 (MQ=255) aaTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTttcttcaaggc > 1:836696/1‑135 (MQ=255) aaTCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTCCCCGGc > 1:166259/1‑140 (MQ=255) tCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGccc < 2:296674/140‑1 (MQ=255) tCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGccc < 2:1130844/140‑1 (MQ=255) tCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGccc < 2:474310/140‑1 (MQ=255) tCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGccc < 2:12554/140‑1 (MQ=255) ggATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTa > 2:283599/1‑140 (MQ=255) gATATGAGCTAGAGGGGGAAAGCTGGAGGGTCAGTGTCTTTCGTTCGGCACACGGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTAc < 2:2426394/140‑1 (MQ=255) gAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCaa < 2:2089617/140‑1 (MQ=255) agagGGGGAACGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGc > 2:2302025/1‑140 (MQ=255) agagGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGccc < 2:1267925/126‑1 (MQ=255) agagGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGc > 1:1090543/1‑140 (MQ=255) agagGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGc > 1:1035051/1‑140 (MQ=255) agagGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATGTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGc > 1:1076582/1‑140 (MQ=255) agGGGGAAAGCTGGAGGGACTGTGTCTTTCGTTCGGCACACCGTGTTTCGTTTGATTTATTTGAAATGTATAGCGCCATACCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCt < 1:818662/140‑1 (MQ=255) agGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCt < 1:1563553/140‑1 (MQ=255) agGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCt < 2:1120719/140‑1 (MQ=255) agGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCt < 2:55542/140‑1 (MQ=255) agGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCt < 2:2419323/140‑1 (MQ=255) agGGGGAAAGCTGGAGGGACAGAGTCTTTCGTTCGGCACACCGTGTTGCGGTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGCTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCt > 2:504248/1‑140 (MQ=255) aaaGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGtt > 1:1529525/1‑140 (MQ=255) aaGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCaaa > 2:1081530/1‑127 (MQ=255) gAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAAt > 2:1559314/1‑140 (MQ=255) gggACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCa < 2:186391/92‑1 (MQ=255) gggACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCa > 1:186391/1‑92 (MQ=255) aCAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCAc > 2:1694460/1‑140 (MQ=255) aGTGTCTTTCGTTCGGCTCACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt < 2:1815312/140‑1 (MQ=255) aGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt < 1:168237/140‑1 (MQ=255) aGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt < 1:686835/140‑1 (MQ=255) aGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt < 2:1271546/140‑1 (MQ=255) aGTGTCTTTCGGTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt < 2:303729/140‑1 (MQ=255) tCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTcaca > 1:633719/1‑140 (MQ=255) tCTTGCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTcaca > 1:1169451/1‑140 (MQ=255) cTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCacac < 2:104243/140‑1 (MQ=255) ttcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATATCGACATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGTAAATTTCACCTCTCACCt > 2:1954427/1‑140 (MQ=255) ttcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAACTTTCACCTCACACCt > 2:347513/1‑140 (MQ=255) ttcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt > 2:917500/1‑133 (MQ=255) ttcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCt < 1:917500/133‑1 (MQ=255) ttcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCt > 2:2009713/1‑140 (MQ=255) ttcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCt > 2:2212459/1‑140 (MQ=255) atcgttcgGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTCCCTCAAACAGCCTGAGGTGTGGAAATTTCACCTCACACCt > 2:424511/2‑140 (MQ=255) acacCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCTCTGAGGGTGACAGGCATCTGGCAGAGTTTGTTCCGGGCCCTTACCTCAAACAGCCTGAGTTTTGGAAATTTCACCTCACACCTGTATAATTCa < 2:2140456/140‑1 (MQ=255) acacCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTTCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCa < 2:763710/140‑1 (MQ=255) acacCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCa < 1:1251850/140‑1 (MQ=255) acacCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCa < 1:1762002/140‑1 (MQ=255) acacCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCa < 1:881358/140‑1 (MQ=255) acacCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCGGTATCATTCa < 2:237286/140‑1 (MQ=255) gtgtTGCGTTTGATTTATTTTCAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACGTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGaaaa < 2:1383340/140‑1 (MQ=255) gtgtTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGaaaa < 1:295447/140‑1 (MQ=255) gtgtTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGaaaa < 2:1892376/140‑1 (MQ=255) gtgtTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGaaaa < 2:1968021/140‑1 (MQ=255) gtgtTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGaaaa < 1:214331/140‑1 (MQ=255) tGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAg > 1:1597144/1‑140 (MQ=255) gCGTTTGATTTATTTGAAACGTATGGCGCCATCCCTGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCATACCTCAAACAGCCTGAAGTATGGAAATTTCATCTCACACCTATATCATTCAGAAAACAAGa < 1:715562/140‑1 (MQ=255) gCGTTTGATTTATTTGAAACGTATGGCGCCATCCCTGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCATACCTCAAACAGCCTGAAGTATGGAAATTTCATCTCACACCTATATCATTCAGAAAACAAGa < 1:1299165/140‑1 (MQ=255) ttGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACaga > 2:151929/1‑140 (MQ=255) ttGATTAATTTGAAATCTATAGCGCCATCCACGATGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGAATCATTCAGAAAACAAGACaga > 1:1634477/1‑140 (MQ=255) gATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAgaga > 2:841115/1‑140 (MQ=255) gATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAgaga > 2:727236/1‑140 (MQ=255) gATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAgaga > 1:737427/1‑140 (MQ=255) gATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAgaga > 1:97311/1‑140 (MQ=255) gATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAgaga > 2:418904/1‑140 (MQ=255) gATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTAGCATTCAGAAAACAAGACAgaga > 2:2320841/1‑140 (MQ=255) atttGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATGTGGCAGAGTTTCTTCCCGGCCCTTACCTAAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACgaga < 2:1497652/140‑1 (MQ=255) atttGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACgaga > 1:516001/1‑140 (MQ=255) aTGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACGAGAAACGaaa < 1:1346002/140‑1 (MQ=255) taGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACGAGAAACGAAAAGaaa < 1:1400954/140‑1 (MQ=255) taGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACGAGAAACGAAAAGaaa < 2:317690/140‑1 (MQ=255) taGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACGAGAAACGAAAAGaaa < 2:1804270/140‑1 (MQ=255) | CATATTGACCTGCTGCCTATATTCCATGAATTCAGCTCGCATTATGGAGAATCAGGATATGAGCTAGAGGGGGAAAGCTGGAGGGACAGTGTCTTTCGTTCGGCACACCGTGTTGCGTTTGATTTATTTGAAATGTATAGCGCCATCCCCGCTGCGGGTGACAGGCATCTGGCAGAGTTTCTTCCCGGCCCTTACCTCAAACAGCCTGAGGTTTGGAAATTTCACCTCACACCTGTATCATTCAGAAAACAAGACAGAGACGAGAAACGAAAAGAAA > NZ_CP034943/764949‑765225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |