| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,738,217 | A→T | 5.4% | intergenic (+146/‑120) | spoVS → / → tdh | stage V sporulation protein SpoVS/L‑threonine 3‑dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,738,217 | 0 | A | T | 5.4% | 361.6 / 7.3 | 106 | intergenic (+146/‑120) | spoVS/tdh | stage V sporulation protein SpoVS/L‑threonine 3‑dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (31/69); new base T (4/2); total (35/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.07e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 111 total aligned reads displayed.
ATAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCGGAGTGGA > NZ_CP034943/1738078‑1738348 | aTAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCGGATAGTATTTTTAGCATATAAAAGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGaaaaaaa > 1:1844781/1‑140 (MQ=255)aTAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACACAAGCCAGAAATGATTTAGAACGTTTCAGaaaaaaa > 1:108086/1‑140 (MQ=255)aTAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGaaaaaaa > 1:579601/1‑140 (MQ=255)aTAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGaaaaaaa > 1:1091840/1‑140 (MQ=255)aTAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGaaaaaaa > 1:2135512/1‑140 (MQ=255) tctcAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCa > 1:1854873/1‑140 (MQ=255) aCCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCAttttt > 1:1252502/1‑140 (MQ=255) aCCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCAttttt > 1:1868145/1‑140 (MQ=255) tGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACa > 1:970208/1‑140 (MQ=255) cTTCACTCAAACAGGTTGTTTTTCATTTGTTGTTATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATTATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGa < 2:8256/140‑1 (MQ=255) cTTCACGCAAACATGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGa < 2:1723284/140‑1 (MQ=255) cTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGa > 1:1590774/1‑140 (MQ=255) cTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGa < 2:1726093/140‑1 (MQ=255) attCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGa < 2:1245305/139‑1 (MQ=255) atgCAAACAGGTTGTTTTTCATTTCTTGTGATATTTTCTCCCGATAGTATTTTTAGCACATAAATGAGCGAATATACAAAA‑TCAGAAATGAGCTAAAACGTTTCAAAAAAAATTTCCGCCCATTTTTCAAGACAGATACt > 2:1940144/3‑140 (MQ=255) atgCAAACAGGTTGTTTTTCATTTATTGTGATATTTTCTCCCGATAGTATTTTTAGCACATAAATGAGCGAATATACAAAA‑TCAGAAATGAGCTAAAACGTTTCAAAAAAAATTTCCGCCCATTTTTCAAGACAGATACt > 2:19681/3‑140 (MQ=255) atgCAAACAGGTTGTTTTTCATTTATTGTGATATTTTCTCCCGATAGTATTTTTAGCACATAAATGAGCGAATATACAAAA‑TCAGAAATGAGCTAAAACGTTTCAAAAAAAATTTCCGCCCATTTTTCAAGACAGATACt > 2:19512/3‑140 (MQ=255) atgCAAACAGGTTGTTTTTCATTTATTGTGATATTTTCTCCCGATAGTATTTTTAGCACATAAATGAGCGAATATACAAAA‑TCAGAAATGAGCTAAAACGTTTCAAAAAAAATTTCCGCCCATTTTTCAAGACAGATACt > 2:772199/3‑140 (MQ=255) gCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACttt > 2:1458846/1‑140 (MQ=255) gCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTAAGAAAAAAATTCAGCCCATTTTTCTAGACAGATACttt > 2:813602/1‑140 (MQ=255) aCAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTc < 2:1755742/140‑1 (MQ=255) gtttgttTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTc < 2:1526649/138‑1 (MQ=255) ggTTGTTTTTCATTTTTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTc < 1:414181/140‑1 (MQ=255) ggTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTc < 1:631180/140‑1 (MQ=255) ggTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTc < 1:1100719/140‑1 (MQ=255) ggTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTc < 2:1543438/140‑1 (MQ=255) ggTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTc < 1:1432343/140‑1 (MQ=255) tgttTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTc > 1:611223/1‑140 (MQ=255) tttttCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTTAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAg < 1:2404636/140‑1 (MQ=255) tttttCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTccg < 1:377159/140‑3 (MQ=255) tttttCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAg < 1:830756/140‑1 (MQ=255) gttgtGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:1647165/140‑1 (MQ=255) gttgtGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:347350/140‑1 (MQ=255) gttgtGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:1118999/140‑1 (MQ=255) gttgtGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:1071362/140‑1 (MQ=255) gATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGtt < 1:580047/140‑1 (MQ=255) gATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGtt < 1:1991349/140‑1 (MQ=255) gATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGtt < 1:1978216/140‑1 (MQ=255) gATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGtt < 2:82468/140‑1 (MQ=255) gATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTGCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGtt < 2:1713907/140‑1 (MQ=255) gATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTGTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGtt < 1:731400/140‑1 (MQ=255) ttttCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACCTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACg < 2:32497/140‑1 (MQ=255) tttCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGc < 2:1123161/140‑1 (MQ=255) tttCTCCCGATAGTATTTTTATCACATACATGAGCGAATATACAAAA‑TCAGAAATGAGCTAAAACGTTTCAAAAAAAATTTCCGCCCAGTTTTCAAGACAGATACTTTTGTCCTTCTGGAAAAGACAGTTCTGTTTACGc < 2:1919229/140‑1 (MQ=255) cttcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTa < 1:1023966/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:1798945/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:1199982/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:1798930/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:505114/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:2348376/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:1951605/140‑1 (MQ=255) tcCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAtt < 2:1592095/140‑1 (MQ=255) gATCGTATTTTTAGCATATAACTGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACGTTTGTCTTCCTCAGAACGACAGTGCTGTTTACGCTTATTccc < 2:917351/140‑2 (MQ=255) gATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCa < 1:2094169/140‑1 (MQ=255) gATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCa < 1:1878362/140‑1 (MQ=255) gATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCa < 1:314593/140‑1 (MQ=255) gATAGTATTTTTAGCATATAAAGGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCa < 2:40938/140‑1 (MQ=255) tATTTTTAGCATATCAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCa < 2:623567/140‑1 (MQ=255) tATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACCGCTACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTAGTCCATATCa < 2:622756/140‑1 (MQ=255) tATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCa < 1:879718/140‑1 (MQ=255) tATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCa < 1:2136967/140‑1 (MQ=255) tATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCa < 1:761547/140‑1 (MQ=255) atatAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATc > 2:1576433/1‑140 (MQ=255) atatAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATc > 2:507876/1‑140 (MQ=255) ataAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCg > 2:1820300/1‑140 (MQ=255) taAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:2076691/104‑1 (MQ=255) taAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:2072226/104‑1 (MQ=255) taAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg > 1:2072226/1‑104 (MQ=255) taAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg < 2:2076738/104‑1 (MQ=255) taAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTg > 1:2076738/1‑104 (MQ=255) taAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGa > 2:1005882/1‑140 (MQ=255) a‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGtaa > 2:976886/1‑140 (MQ=255) a‑CGGAGATCCAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAACACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTCCAATCCGAATGgaa > 2:1421546/1‑140 (MQ=255) aaGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTc > 1:617500/1‑140 (MQ=255) aaGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTc > 2:1284006/1‑140 (MQ=255) aaGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTc > 1:732382/1‑140 (MQ=255) ccAGAAATGATTTATAACGTTTCAGAAAAAATTTCCGCCCATTGTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTTCTGTTTAAGCTTATTCAATATCTTGGTACAAGCCGAATGTAATAAGAATTTTTCAag < 1:643382/140‑1 (MQ=255) ccAGAAATGATTTATAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAAtt > 1:757232/1‑133 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAAtt < 2:757232/133‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAAtt < 2:756817/133‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAAtt > 1:756817/1‑133 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag < 1:779389/140‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag < 1:1820300/140‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag < 2:617500/140‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag > 2:2408678/1‑140 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag < 1:431907/140‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATGTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag < 1:779237/140‑1 (MQ=255) ccAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCAATTTTTCAAGACAGATTCTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAag < 2:766045/140‑1 (MQ=255) acAGAATTGATTTAGAAAGTTTAAGAACAATATTTCGCCCATTTTTCAAGACAGTTACTTTTGTCTTCCTACTAAAGAAAGTGCTTTTTACGCTTATTGCATATCATGGTTCAATCCGAATGTAATAAGAAtttttatag < 2:493488/139‑5 (MQ=255) aaaTGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAaggagg > 1:1828354/1‑140 (MQ=255) aTGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGAt < 1:293607/140‑1 (MQ=255) gcacgggtCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATg < 1:1263686/133‑1 (MQ=255) gAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATg < 2:1252502/140‑1 (MQ=255) gAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATg < 2:1868145/140‑1 (MQ=255) aCGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCg < 2:1590774/140‑1 (MQ=255) aCGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCg < 1:376713/140‑1 (MQ=255) aCGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCg < 1:1382872/140‑1 (MQ=255) aCGGTTCAGAACAAAATTCCGCCCATTTTTCAAGACAGATACTTTGGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCg < 2:2266498/140‑1 (MQ=255) ttCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCGGAGt > 1:448356/1‑140 (MQ=255) aGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCGGAGTGGa < 1:1005882/140‑1 (MQ=255) | ATAAAGCATTCTCAACCTGTTTGCTTCACGCAAACAGGTTGTTTTTCATTTGTTGTGATATTTTCTTCCGATAGTATTTTTAGCATATAAATGA‑CGGATATACAAAAGCCAGAAATGATTTAGAACGTTTCAGAAAAAAATTCCGCCCATTTTTCAAGACAGATACTTTTGTCTTCCTCAGAAAGACAGTGCTGTTTACGCTTATTCCATATCATGGTACAATCCGAATGTAATAAGAATTTTTCAAGGAGGATTGTACATGCGGAGTGGA > NZ_CP034943/1738078‑1738348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |