Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349431,730,0960GC32.6% 131.0 / 25.5 103E173Q (GAA→CAA) rodZcell shape determination protein RodZ
Reads supporting (aligned to +/- strand):  ref base G (30/36);  new base C (1/31);  total (31/72)
Fisher's exact test for biased strand distribution p-value = 6.77e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

CTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTCTTGGATTCGAGTACGCG  >  NZ_CP034943/1729959‑1730228
                                                                                                                                         |                                                                                                                                    
cTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAgaagaa                                                                                                                                    >  1:2927850/1‑140 (MQ=255)
     aaaTCATTTCCGCGAAGTGAAAGAAAGTACTAAATCCAAAAAGATTCAACGATAAAACAGAATCAAAGAAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACCAAAGAAAAAGAAGATAAAAAAGAACAAAGCGa                                                                                                                               <  2:808450/140‑1 (MQ=255)
     aaaTCAATTACGCAAAGTGAAAGCAAGTACGACATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGAAACTAAAAAAGAAACGAAATAAAAAGACCATAAAAAACAAGAAAGCGa                                                                                                                               <  2:3154367/140‑1 (MQ=255)
        tCAATTACGAAAAGTGAACCAAATTACCAAATCCCAAAATATTAAACGCAAAAAAATAATCAAAGAAACACAACTGAAAAAGAGCCATACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAACAAGAAAGCGACAg                                                                                                                            <  2:2818788/140‑1 (MQ=255)
          aaTTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTg                                                                                                                          >  2:3905920/1‑140 (MQ=255)
                 aaaatttaaaGCAATTACTAAATCACAAATGATTCAACTATAAAACAGAATCAAAGAAACAGCTCTTAAAATGAGGCAGACACTAAAAAAGAAACCAAAGAAAAATAAGATAAAAAAGAAGAAAGCGACAGTGATAAACt                                                                                                                   <  2:2082136/133‑1 (MQ=255)
                  aaatttaaaGCATGTACGAAATCCAAAAAGATTAAACGATAAAACACAATAAAAGCAACAGATCTTAAAAACAGGCAGACACTAAAAAAGAAACGAAATAAAAAGAACATAAAAAAGAAGAAAGCGACAGTGATAAACTg                                                                                                                  <  2:436397/134‑1 (MQ=255)
                  aaattcaaaGAAATTACTAAATCCCAAAATATACAACGCTAAAAGAGAAACAAAGCAACTGCTCTGAAAAAGAGCCAGACACTAAAAAATAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTg                                                                                                                  <  2:1953672/134‑1 (MQ=255)
                  aaaGTTAAAGCAAGTAAGAAATCCAAAAAGATTCAACGCTAAATGATAATAAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAACAAAAAGAAGATAAAACAGACCAAAGCGACAGTGATAAACTg                                                                                                                  <  2:1659547/140‑1 (MQ=255)
                  aaaGTTAAAGAAAGTACGAAATCCCAAAAGATTCAACGCTAAAACAGAATCAAAGCAACAGCTCTGAAAAAGAGGCACACACTAAAAAATAAACGAAAGAAAAACAAGATAAAAAAGAACAAAGCGACAGTGATAAACTg                                                                                                                  <  2:1819367/140‑1 (MQ=255)
                    aGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTCAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGga                                                                                                                >  1:554007/1‑140 (MQ=255)
                    aGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGAAACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGga                                                                                                                >  1:1680731/1‑140 (MQ=255)
                       caaaGAAACTACCACACCCCAAAACATTCAACGAAAAACGAGAACAAAACCAACCGCTCTCAAAAACAGGCAGACACTAAAAAAGAAACGAACGAAAACGAAGATAAAAAAGAACAAAGCGACAGTGATAAACTGGAGAt                                                                                                             <  2:2557628/139‑1 (MQ=255)
                           gCAATTACGAAATCCCAAAAGATTCAACGCTAAAATAGAATCAAAGCAACAGCTCTGAAAAAGAGGAAGACAATAAAAAATAAACGAAACAAAAAGAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGGAGATTaaa                                                                                                         <  2:3593963/140‑1 (MQ=255)
                              aGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAGACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCa                                                                                                      >  2:3536250/1‑140 (MQ=255)
                                tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                                    >  1:814972/1‑140 (MQ=255)
                                tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                                    >  2:3878128/1‑140 (MQ=255)
                                tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACACCTCTGACAAAGAGGCAGACACTATTAAAGAAACGAAAGGACCAGACGATCAACAAGAAGAAAGCGACCGTGATCCACTGGAGATTAAAGCaag                                                                                                    >  1:2791313/1‑139 (MQ=255)
                                tACGAAATCCCAAAAGATTAAACGATAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAACAAACCAAACAAAAAGAACATAAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                                    <  2:1755254/140‑1 (MQ=255)
                                   taaaTCCAAAAATATTAAACGATAAAAGATAATAAAATCAAAAGATCTTAAAAAGAGGAATAAAATAAAAAATAAACCAAACAAAAACAAGATAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTgg                                                                                                 <  2:2158856/139‑1 (MQ=255)
                                     aaTCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACAGGCa                                                                                               >  2:1174777/1‑140 (MQ=255)
                                       tCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAACAAGAGGCAGACACTAAAAAAGACACGAAAGAAAAAGAAGATAAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACt                                                                                             >  1:3242228/1‑140 (MQ=255)
                                         ccAAAATATTCAACTCTAAAAGATAATCAAAGAAACACCAAAGAAAAAGAGGCATACACTAAAAAACAAACTAAAGAAAAAGAACATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGa                                                                                           <  2:2114186/140‑1 (MQ=255)
                                           aaaaGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAACAAGAGGCAGACACTAAAAAAGAAACGAAAGACAACGAAGATAAAAAAGTAGAAAGCGACAGTGATAAACTGGAGATTAAAGCCACTGGCACTGAAg                                                                                         >  1:429091/1‑140 (MQ=255)
                                             aataTTAAACGCTAAAAGTCAAAAAAACCAACACATCTCAAAAAGAGGCAGACAATAAAAAATAAACGAAACAAAAATAAGAAAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAggg                                                                                       <  2:906767/137‑1 (MQ=255)
                                             aaGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAggg                                                                                       >  1:2915228/1‑140 (MQ=255)
                                             aaGATTCAACGATAAAAGAGAATCAAAGCAACAGCTCTTAAAAAGAGCCAGACACTAAAAAAGAAACGAAACAAAAACACGCTAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAggg                                                                                       <  2:707226/140‑1 (MQ=255)
                                                  tCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGCACGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGGGCTTAAAGCCCCTGGCACTGAAGGGTCAtt                                                                                  >  2:3710804/1‑140 (MQ=255)
                                                  tCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCAtt                                                                                  >  1:3450933/1‑140 (MQ=255)
                                                  tCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACGGGAGATTAAAGCAACTGGCACTGAAGGGTCAtt                                                                                  >  1:4247822/1‑140 (MQ=255)
                                                     ccgatAACAGACAATCAAAGCAACCGCTCTCAAAAAGAGGCACACACTAACAAACAAACGAAACAAAAACAAGATAAAAAACAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:4029775/136‑1 (MQ=255)
                                                     ccGCTAAAAGATATTCAAAGCACAAGATCTGAAAAAGAGGCACACACTAAAAAATAAACCAACCAAAAAGAAGATAAAACAGACCAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:3837796/139‑1 (MQ=255)
                                                     actcTAAATTAGAATCAAAGCAACAGCTCTGAAAAAGAGGCATACAATAAAAAACAAACGAAAGAAAAAGAAGATAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:188588/137‑1 (MQ=255)
                                                     actatAAAACACAATAAAAGCAACAGCTCTTAAAAACAGGAATAAAATAAAAAACAAACGAAACAAAAACAATATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:210171/136‑1 (MQ=255)
                                                     acgaaaaaacaaaaacaAACAAACACATCTGAAAAAGCGCCAGAAACAAAAAACCAAACCAAACAAAAACAACATAAAAAACAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:931126/135‑1 (MQ=255)
                                                     acgaaaaaaTACAATAAAACAAACATCTCTCAAAAAGAGCCACACAATAAAAAACAAACCAAACAAAAACAACATAAAAACCAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:517079/135‑1 (MQ=255)
                                                     acccaaaaaGATAAAAAAACAAACAGCTCTGAAAAAGAGCCACACACTAAAAAACAAACCAAAAAAAAACAAAATAAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:675083/135‑1 (MQ=255)
                                                     aaccTAAAACAGAATCAAACCAACAGCTCTTAAAAAGAGTCAGACCCTAAAAAACAAACGAAACAAAAACACCATAAAAAAGAAGAAAGCGACAGTGATAACCTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:3497161/137‑1 (MQ=255)
                                                     aCGCTAACACACAATCAAAGAAACACCTAAGAAAAAGAGGCACACAATAAAAAACAACCGAAAGAAAAAGACCATAAAAAAGACCCACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:3994515/140‑1 (MQ=255)
                                                     aCGCTAAAATACAATCAAAGCAACAGATATTAAAAATAGGCAGAAAATAAAAAATAAACGACACAAAAACAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGAATAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:3994461/140‑1 (MQ=255)
                                                     aCGCTAAAACAGAATCAAACCAACACCTATGAAAAAGAGTCATAAAATAAAAAAGAAACGAAACAAAAACACGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:3682937/140‑1 (MQ=255)
                                                     aCGATAAAATACAAAAAAAGCAACAGCTCTCAAAAAGAGCCACACACAAAAAAACAAACCAAACAAAAACAACATAAAAAACAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:2871373/140‑1 (MQ=255)
                                                     aCGATAAAAGAGAATAAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACCAAAGAAAAAGAAGATAAAAAAGAATAAAGCGACAGTGATAACCTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:3339061/140‑1 (MQ=255)
                                                     aCGATAAAAGACAATCAAAGCAACAGCTCTGAAAACGAGGCAGCAACTAAAAAACAAACGAAACAAAAAGACCATAAAAAACAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  2:410341/140‑1 (MQ=255)
                                                     aCGATAAAAGACAATAAACCCACCCCCTCACAAAAACAGGCACACACAAAAAAAGACACCAAACAAAAACAACAAAAAAAACAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                                               <  1:3536250/140‑1 (MQ=255)
                                                       gCTAAAATACAAACAAACCAACCCCTCTCAAAAAGAGGCAGACAATAAAAAACAAACCAAAAAAAAAGAAGATAAAAAACAACACCGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGa                                                                             <  1:3878128/140‑1 (MQ=255)
                                                             agagAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATg                                                                       <  2:2927850/140‑1 (MQ=255)
                                                             agagAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATg                                                                       <  2:814972/140‑1 (MQ=255)
                                                             agagAATCAAAGAAACAGCTCTTAAAAAGAGGCAGACACTAAAAAATAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATg                                                                       <  2:3425425/140‑1 (MQ=255)
                                                              cacaaTCAAAGCAAAACCTCTGAAAAACTTGCAGACAATAAAAAACAAACTAAAGAAAACGAAGATCAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGa                                                                      <  1:4201077/137‑1 (MQ=255)
                                                               agaATCAAAGCAACAGCTCTGAAAAAGAGGCAGACAATAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGACCAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                                     <  2:1081549/140‑1 (MQ=255)
                                                               agaATCAAAGCAACAGCTATTAAAAAGAGCCACACACAAAAAAATAAACGAAAGAAAAACAACATAAAAAACACGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                                     <  2:1510687/140‑1 (MQ=255)
                                                               agaATCAAACCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAACAAAAAGAAGATAAAAAACAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                                     <  2:1509256/140‑1 (MQ=255)
                                                                gaATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAg                                                                    >  1:579411/1‑140 (MQ=255)
                                                                gaATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAg                                                                    >  1:608337/1‑140 (MQ=255)
                                                                 aaTCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTg                                                                                                                  >  1:4252001/1‑93 (MQ=255)
                                                                 aaTCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTg                                                                                                                  <  2:4252001/93‑1 (MQ=255)
                                                                 aaTCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAgt                                                                   >  2:4117959/1‑140 (MQ=255)
                                                                 aaTCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAgt                                                                   >  1:3234314/1‑140 (MQ=255)
                                                                 aaTCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAgt                                                                   >  2:2081454/1‑140 (MQ=255)
                                                                 aaTCAAAGCAACAGCTCTGAAAAAGAGGCAGACACT‑AAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAAATGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTAATAAgtt                                                                  >  2:2270745/1‑139 (MQ=255)
                                                                   tCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAgtgt                                                                 >  1:228690/1‑140 (MQ=255)
                                                                    aaaaCCAACCGCTCTCAAAAACAGGCCCACAATAAAAAACAAACCAAAAAAAAACAACAAAAAAAACACCAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTc                                                                <  1:331325/139‑1 (MQ=255)
                                                                       aGCAACAGCTCTGAAAAAGAGGCAGACACGAAAAAAGAAACGAAAGAAAAAGAAGATCAAAAAGAAGAAAGCGACAGTGATAAACTGGCGATTAAAGCCACTGGCACTGAAGGGTCATTAACGACTTCTGACGTGTCCgg                                                             >  2:3656942/1‑140 (MQ=255)
                                                                         caacccctctCAAAAACACCCACACAAAAAAAAACAACCCAAACAAAAATACCAGAAAAAACCAGACAGCGACAGTGATAAACTGGAGATAAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGgcg                                                           <  1:1637121/134‑1 (MQ=255)
                                                                            cacatctGAAAAAGAGGCACACAAAAAAAAACAAACGAAACAAAAACAAGATAAAAAAGAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTg                                                        <  1:1924607/136‑1 (MQ=255)
                                                                            cAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACGTATGAAGTGTCCGGCGCTg                                                        >  2:2532831/1‑140 (MQ=255)
                                                                                 ctGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGgcgcctgtctc                                                   >  1:3762148/1‑133 (MQ=255)
                                                                                       cagagCCAGACTCTAAAAAAGAAACGAAAGAACAAGACGATACAACAGAAGAAAGCGACAGTGATAAACTGGACATTAAAGCAACTGGCTCTGTAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAg                                             <  2:3152641/139‑1 (MQ=255)
                                                                                        agagGCAGACACTAAAAAAGAAACGAAAGAAAAACCACATACAAAAGACCAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGc                                            <  2:3124878/140‑1 (MQ=255)
                                                                                         gagGAATACAATAAAAAAGAAACTAAATAAAAATAATATAAAAAATAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCt                                           <  2:470724/140‑1 (MQ=255)
                                                                                             catacaaTAAAAAACAAACCAAAAAAAAATAATATAAAAAACAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGaa                                       <  1:1544249/137‑1 (MQ=255)
                                                                                              aGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAAc                                      >  1:3177476/1‑140 (MQ=255)
                                                                                                 cacaAAAAAATAAAGCAAATAAAAATAAGATAAAAAACAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:1680731/140‑1 (MQ=255)
                                                                                                 cacaAAAAAACAAACCAAACAAAAATACCATAAAAAAGACCAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:3645397/140‑1 (MQ=255)
                                                                                                 cacTAAAAAATAAACTAAAGAAAACTAAGATAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:857794/140‑1 (MQ=255)
                                                                                                 cacTAAAAAATAAACTAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:554007/140‑1 (MQ=255)
                                                                                                 cacTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGACAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTGATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:3959166/140‑1 (MQ=255)
                                                                                                 cacTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:2574169/140‑1 (MQ=255)
                                                                                                 caatAAAAAATAAACCAAACAAAAAGAATATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:2037246/137‑1 (MQ=255)
                                                                                                 caatAAAAAAGAAACGAAAGAAAAACATGATAAAAAAGAATAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:910262/137‑1 (MQ=255)
                                                                                                 caatAAAAAACAACCGAAATAAACTGAAGATAAAAAACAACAACGCGACAGTGATAACCTGGAGATTAAAGCTACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:3741967/137‑1 (MQ=255)
                                                                                                 caatAAAAAACAAACCAAAGAAAACCAAGAAAAAAACCAAGAACGCGACCGTGATAACCTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:1605080/137‑1 (MQ=255)
                                                                                                 caacaaaacaGAAACGAAACAAAAACAACATAAAACACAACACCGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:2802900/136‑1 (MQ=255)
                                                                                                 acaaaaaaaaTAAAATAAACAAAAAGAAGAAAACAAACACCCACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:2219204/136‑1 (MQ=255)
                                                                                                 aacTAAAAAATAAACGAAAGAAAAAGAAGATAAAAAAGAATAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGATGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:3577061/139‑1 (MQ=255)
                                                                                                 aaatAAAAACGAAACGAAACAAAAACAACCAAAAAACCAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:3742004/137‑1 (MQ=255)
                                                                                                 aaatAAAAAATAAACTAAATAAAAACAACATAAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  1:1299393/137‑1 (MQ=255)
                                                                                                 aaatAAAAAAGAAACGAAATAAAAAGAATATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:2887352/137‑1 (MQ=255)
                                                                                                 aaatAAAAAAGAAACGAAAGAAAAAGAATATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                                   <  2:770854/137‑1 (MQ=255)
                                                                                                    tAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAgg                                >  2:1377727/1‑140 (MQ=255)
                                                                                                      aaaaaCAAACCAAACAAAAAGACGATAAAAAAGAAGACCGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCa                              <  1:2268742/140‑1 (MQ=255)
                                                                                                           gAAACGACAGAAAAAGATGATAAAAAACACTAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACGGAAGGCATCAGa                         <  2:1131908/140‑1 (MQ=255)
                                                                                                           caaaCTAAAAAAAAATAACATAAAAAATAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa                         <  1:2270745/139‑1 (MQ=255)
                                                                                                           aaacacaaaaaaaaacaaaaaaaaaaacaaCAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa                         <  1:1454412/134‑1 (MQ=255)
                                                                                                            aaaCGAAAGAAAAAGAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGCAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGAc                        >  1:2827777/1‑140 (MQ=255)
                                                                                                             aaCTAAACAAAAAGAATATAAAAAACAATAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACa                       <  2:1756290/140‑1 (MQ=255)
                                                                                                              aCGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAg                      >  1:2253048/1‑140 (MQ=255)
                                                                                                                      aaaccaagaTAAAAAATAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTCTTGGa              <  2:2915228/135‑1 (MQ=255)
                                                                                                                                  aaaaGACGCACGCGACAGTGATACACTGGAGATTAAAGCCACGGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTCTTGGATTCGAGTAcgcg  <  1:2108030/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                    
CTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACAGCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTCTTGGATTCGAGTACGCG  >  NZ_CP034943/1729959‑1730228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑