BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NZ_CP034943	607,562	G→C	13.4%	G135G (GGG→GGC)	EO946_RS03185 →	collagen‑like protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	607,562	0	G	C	13.4%	545.5 / 11.5	230	G135G (GGG→GGC)	EO946_RS03185	collagen‑like protein
Reads supporting (aligned to +/- strand): ref base G (84/106); new base C (10/21); total (101/129)
Fisher's exact test for biased strand distribution p-value = 2.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 241 total aligned reads displayed.

CAGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACAGGAGCTACCGGGGAAG  >  NZ_CP034943/607423‑607701

 aggagcgacaggagcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCgggg                                                                                                                                            <  1:4513767/140‑1 (MQ=255)

        acaggagcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCTACAGGAGCTACCTGGGACGCCGGACCAGCCGGGGCCACggg                                                                                                                                     >  2:668329/1‑140 (MQ=255)

        acaggagcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACggg                                                                                                                                     <  2:3364984/140‑1 (MQ=255)

        acaggagcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACggg                                                                                                                                     >  1:399393/1‑140 (MQ=255)

        acaggagcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCCGGGAAGCTGGACCAGCGGGAGCGACGGGACCGACCGGCGCTACCGGGGGAGCCGGACCAGCCGGGGCCACggg                                                                                                                                     >  2:2201263/1‑140 (MQ=18)

        acaggaccAACCGGTGAACACGGACCACCGGGAGACACTGGAGCCACAGGAGCGACAGGTGAAGCCGGCCAAGCGGGACCACCTGGAGCGACGGGAGCTACTGGGGATACCGGGGAAGCCGGACCAGCCGGGGCCACggg                                                                                                                                     <  1:640098/140‑1 (MQ=9)

          cggagcTACCGGGGAAGCGGCACCCGCCGGCGCTACCGGAGCGCCAGGAGCGACAGGCGCTTCGGGGGAAGCTGGACCAGCTGGAGCGACGGGAGAGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAg                                                                                                                                   <  1:1552365/139‑1 (MQ=17)

          aggagcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAg                                                                                                                                   <  1:2858165/140‑1 (MQ=255)

              gcgaCCGGGGAAGCCGTCCCACCCGGCCCGACACGAGCGACAGGAGCGACCGGAGCAACCCGGGCAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACTGGGGAAGCCGGAACAGCCGGGGCCACGGGAGCcac                                                                                                                               <  1:1231725/137‑1 (MQ=18)

              gcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCcac                                                                                                                               <  1:107359/140‑1 (MQ=255)

              gcTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCcac                                                                                                                               <  1:3507304/140‑1 (MQ=255)

              ccTACCGGGGAAGCCGGCCCAGCCGCAGGGACAGGCGCGCCAGGACCGACTGGAGCTACCGGGGACGCTGGACCAGCGGGAGCGACGGGAGCGACCGGAGCTACCGGGGACGCCGGACCAGCCGGGGCCACGGGAGCcac                                                                                                                               <  1:845065/139‑1 (MQ=255)

               ctcccGGGGAAGCCGGACCACCCGGAGCCACCGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCGGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCcaca                                                                                                                              <  1:587844/137‑1 (MQ=18)

               cTACCGGGGCTGCCTGACCAGCCGGAGCGACAGGAGCGAAAGGAGCGACAGGAGCTCCCGGTGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCcaca                                                                                                                              <  1:2437252/140‑1 (MQ=21)

               cTACCGGGGAAGCCGGACCAGCCGGAGCGACCGGCGCGACAGGAGCGCCAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCcaca                                                                                                                              <  1:2780622/140‑1 (MQ=255)

                 aCCGGTGACGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGTGAAGATGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAgg                                                                                                                            <  1:3256435/140‑1 (MQ=255)

                 aCCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGACGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGCGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACCgg                                                                                                                            >  1:4160027/1‑140 (MQ=255)

                  ccGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAggg                                                                                                                           >  2:3047315/1‑140 (MQ=255)

                   cgcggAAGCCGGACCACCCGCAGCGACAGGACCCACAGGAGCGACAGGAGCTCCCGGGGAAGCTGGCCCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAgggg                                                                                                                          <  1:1871099/137‑1 (MQ=21)

                   cGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGCCAGGAGCTACCGGGGAAGCTGGACCCGCTGGAGCGACGGGAGCGACCGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAgggg                                                                                                                          >  2:735074/1‑140 (MQ=255)

                   cGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAgggg                                                                                                                          <  1:5007898/140‑1 (MQ=255)

                   cGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAgggg                                                                                                                          <  1:3123536/140‑1 (MQ=255)

                      ggACGCAGGACCAGCCGGAGCCCCAGGACCCACAGGAGCTACAGGAGCTCCCGGCGCACCTGGACCTGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTa                                                                                                                       <  2:4759450/140‑1 (MQ=18)

                      ggAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTa                                                                                                                       <  2:553248/140‑1 (MQ=255)

                      ggAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCCACAGGCGCGACGGGGGAATCCACATCAGCGGGGGCCCGGGGCGCCAGGGGGGCtc                                                                                                                       >  1:1639597/1‑139 (MQ=17)

                       gAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTa                                                                                                                       >  2:2410717/1‑139 (MQ=255)

                        aaGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCAACCGGGGAAGCTGGACCAGCTGGAGCGAGGGGAGCGACAGGATCAACAGGCGACCCCGGACCAGCCGGGGCGACCGGAGCGACGGGGgctgct                                                                                                                     >  2:1035173/1‑140 (MQ=17)

                           ccGGACCAGCCGGACCCCCAGGACCCACAGGAGCCACAGGAGCTCACGGGGCAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTggg                                                                                                                  <  1:4354820/140‑1 (MQ=18)

                                ccAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGc                                                                                                             <  1:3047315/140‑1 (MQ=255)

                                   gCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCgg                                                                                                          >  2:3815699/1‑140 (MQ=255)

                                    ccGGAGCGACAGGAGCGACAGGAGCGACAGGCGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGCGACGCCGGAGCAGCGGGGGCCACGGGAGCCACAGGGGCGCCTGGGGCCGCCggc                                                                                                         >  2:109546/1‑139 (MQ=21)

                                    ccGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGa                                                                                                         <  1:3304088/140‑1 (MQ=255)

                                          cgacaggagcgacaggagcgacaggagCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGcc                                                                                                   <  1:3661952/140‑1 (MQ=255)

                                            acaggagcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCgg                                                                                                 <  2:1682806/140‑1 (MQ=255)

                                              aggagcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCgg                                                                                                 <  1:5126311/138‑1 (MQ=255)

                                              aggagcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCgg                                                                                                 <  1:3789380/138‑1 (MQ=255)

                                              aggagcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCgg                                                                                                 >  2:3789380/1‑138 (MQ=255)

                                              aggagcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAg                                                                                               >  1:1418692/1‑140 (MQ=255)

                                              aggagcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAg                                                                                               >  1:5132606/1‑140 (MQ=255)

                                                  gcgacaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGACGCCGGACCAGCCGGGGCCCCGGGAGCCACAGGGGCTCCTGGGGAAGCCGGACCAGCGGGAGCGAc                                                                                           >  2:4972034/1‑140 (MQ=255)

                                                     acaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACggg                                                                                        <  1:4085042/140‑1 (MQ=255)

                                                     acaggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGCGAAGCCGGACCAGCCGGCGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGGGCCAgg                                                                                        >  2:3525706/1‑140 (MQ=255)

                                                     acaggagcgacaggagcTACCGGGGAAGCTGGACCAGCGGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCACCGGGCGCAGCCGGACCACCCGGAGCCACCgg                                                                                        >  2:578085/1‑140 (MQ=18)

                                                       aggagcgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCCACAGGAGCGACAGGGGCTACAGGGGAAGCCGGACCAGCCGGAGCGACAGGAg                                                                                      >  2:4608365/1‑140 (MQ=255)

                                                          cgcgacaggaccGAGCGGCGAAGCTGGACCATCTGGAGCGACGGGAGCCACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACCGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTa                                                                                   <  1:2447147/139‑1 (MQ=18)

                                                            cgacaggagcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACTGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTAcc                                                                                 >  1:1371127/1‑140 (MQ=255)

                                                                   agcTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAg                                                                          <  1:4823793/140‑1 (MQ=255)

                                                                     cTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGCGCCACGGGAGCGACAGGGGCTCCTGGGGAAGCCGGACCCGCCGGAGCTACAGGAGCTACCGGGGACGcc                                                                        >  1:3365820/1‑140 (MQ=21)

                                                                     cTACCGGGGAAGCAGGACCAGCAGGAGCGACGGGAGCGACCGGAGCGACAGGGGAAGCCGGACCAGCCGGGGCCCCGGGAGCCACAGGGGCTCCGGTCGACGCCGGACCAGCCGGACCGCCAGGAGCTACCGGCGACGcc                                                                        >  1:978021/1‑140 (MQ=18)

                                                                       aCCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACTGGGGCTCCGGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGCAGCCgg                                                                      >  2:5003887/1‑140 (MQ=255)

                                                                         cGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCGACGGGAGCAACAGGGGCTCCTGGGGAAGCCGGACCTGCCGGAGCGACAGGAGATACCGGGGAAGCCGGAc                                                                    >  2:5123540/1‑140 (MQ=18)

                                                                         cGGGGAAGCTGGACCAGCGGGAGCGACGGGAGCGACAGGATCTACCGGGGAAGCCGGACCAGCCGGGGCGACGGGAGCGACAGGGGCTACGGGGGAAGCCGGACCGGCCGGAGCGACCGGTGCTGCCGGGGCCGCCGGAc                                                                    >  1:5027581/1‑140 (MQ=18)

                                                                               aGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCg                                                              >  2:4555062/1‑140 (MQ=255)

                                                                                gCTGGACCCGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGACCCCGGACCAGCCGGGGCCACGGGAGCCACAGGCGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCgg                                                             <  1:3721471/140‑1 (MQ=255)

                                                                                gCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCgg                                                             >  1:4225817/1‑140 (MQ=255)

                                                                                gCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCgg                                                             <  1:4693744/140‑1 (MQ=255)

                                                                                  tGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACCGGGGACGCCGGACCAGCCGGAg                                                           >  1:2323441/1‑140 (MQ=255)

                                                                                     aCCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTCCTGGGGACGCCGGACCAGCCGGAGCGACAGGAGCTACAGGGGAAGCCGGACCAGCCGGAGCGa                                                        >  2:3228194/1‑140 (MQ=255)

                                                                                     aCCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGa                                                        >  1:4844575/1‑140 (MQ=255)

                                                                                     aCCAGCGGGAGCGACGGGAGCGACAGGCGGTACCGGGGAAGCCGGCCCAGCCGGGGCCAGGGGAGCCCGTGGGGCGACTGGGGAAGCCGGAGCCGCCGGAGCGCCTGGCGCTGCCGGGGGAGCGGGCGCGGCGGGAGCgg                                                        >  1:1340369/1‑139 (MQ=16)

                                                                                      ccAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGAc                                                       <  1:4570664/140‑1 (MQ=255)

                                                                                      ccAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGAc                                                       <  1:1914794/140‑1 (MQ=255)

                                                                                          cTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCGACGGGAGCCACGGGGGCTCCCGGCGAAGCATCACCAACCGCAGCCACAGGCGCTACCGGGGAACCCGCACCGGCCGCAGCGACAgcc                                                   >  1:4315486/1‑138 (MQ=17)

                                                                                          cTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGGCGGACCAGCCGGAGCGCGATGAGAAAGCGGGGAATCCCGACCCAGCGGAGCGACAGGa                                                   >  2:1126584/1‑140 (MQ=14)

                                                                                          cTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGACGCCGGACCAGCCGGAGCGACAGGa                                                   >  1:3065776/1‑140 (MQ=255)

                                                                                          cTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCAGGAGCGACAGGAGCTACCGGGGACGCCGGACCACCCGGAGCGACCGGa                                                   >  2:4070918/1‑140 (MQ=255)

                                                                                              aGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTa                                               >  1:2650447/1‑140 (MQ=255)

                                                                                              aGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACAGGAGcca                                               >  2:215638/1‑138 (MQ=255)

                                                                                              aGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGCGCCACGGGAGCCACAgg                                                                                                                            >  2:1511513/1‑63 (MQ=255)

                                                                                              aGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCCACGGGAGCCACAgg                                                                                                                            <  1:1511513/63‑1 (MQ=255)

                                                                                                  aCGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAgggg                                                                                                                          >  1:2205634/1‑61 (MQ=255)

                                                                                                  aCGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGACGCCGGACCAGCCGGAGCGACAGGAGCTACCgg                                           >  1:1594459/1‑140 (MQ=255)

                                                                                                  aCGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCgg                                           >  1:1667646/1‑140 (MQ=255)

                                                                                                   ccggACCGACCGGAGCGACCGGGGAAGCCGGCCCAGCCGGGGCCCCGGGAGCCCCCGGGGCTACCGGGGAAGCCGGCCCAGCCGGAGCGACTGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCggg                                          <  2:1932914/138‑1 (MQ=17)

                                                                                                   cGGGCGCCACAGGAGCACCCGGTGAACCCGCACCCGCCGGCGCCACGGGAGCCACAGGCGCTACCGGTGAAGCCGGACAACCCGGAGCGACTGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCggg                                          <  1:1788492/140‑1 (MQ=14)

                                                                                                   cGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCggg                                          >  1:357814/1‑140 (MQ=255)

                                                                                                    gggAGCGACAGGAGCGACCGGGGAAGCCGGACCACCCGGCGCCACGGGAGCCACAGGGGCTACGGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCACCCGGAGCGACGGGAGCCACCgggg                                         <  2:1667646/140‑1 (MQ=14)

                                                                                                       cccGACAGGAGCCACCGGCGAAGCCGGACCCCCCGGGGCCCCGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAg                                      <  1:20894/138‑1 (MQ=17)

                                                                                                       aGCGACAGGAGCGACCGGGGCCGCCGGACCCGCCGGCGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAg                                      <  1:1320649/140‑1 (MQ=17)

                                                                                                            cAGGAGCTACCGGGGCCGCCGGACCCGCCGGGGCCACGGCAGCCACAGGCGCTACTGGTGAAGCCGGAGCAGCCGGAGCGACAGGTGCTACCGGGGACGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGa                                 <  2:2270518/140‑1 (MQ=18)

                                                                                                             aGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGAc                                <  2:4235051/140‑1 (MQ=255)

                                                                                                             aGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGAc                                <  1:1400060/140‑1 (MQ=255)

                                                                                                                    aCCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCgg                         >  1:338847/1‑140 (MQ=255)

                                                                                                                    aCCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCgg                         <  1:4969847/140‑1 (MQ=255)

                                                                                                                    aCCGGGGAAGCCGGACCAGCCGGGGCAACGGGAGCCCCAGGGGCTACTGGGGAAGCCGGACCACCGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCgg                         <  1:707918/140‑1 (MQ=255)

                                                                                                                    aCCGGGGAACCCGGACCAGCCGGCGCCACGGGAGCCACCGGCGCTACAGGGGAACCCGGACCCACCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCgg                         <  2:2635490/140‑1 (MQ=17)

                                                                                                                      cGGGGCAGGCGGACCCGCCGGCGCCACGGGAGCCACAGGGGCTACTGGGGCAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAg                       <  2:1300651/140‑1 (MQ=17)

                                                                                                                          gAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGAc                   <  2:1418692/140‑1 (MQ=255)

                                                                                                                          gAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCGACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGCCCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGAc                   >  1:34131/1‑140 (MQ=255)

                                                                                                                           caGCCGGACCAGCCGCGGCCACGGGCTCCTCTGGCTCTTGCGGGGCAGCCGGACCATCTGGCGCTACAGGATCTACCGGGGAAGCCGCACCAGCCTGATCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACa                  <  2:2037739/139‑1 (MQ=2)

                                                                                                                             gCCGGACCAGCCGGTGCCACGGGAGCCACAGGGGCGACTGGGGAAGCCGGACCCGCCGGAGCTACAGTAGCTACCCGCGACGCCGGAGCTGCCGGAGGGACAGGAGCTACGGTGGAAGCCGGACCCCCCGGTGCgccggg                >  1:750141/1‑135 (MQ=255)

                                                                                                                             gCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTCCTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACCGGAGCGACCGGCGACGCCGGCACAGCAGGAGCGACCgg                >  1:4247427/1‑140 (MQ=17)

                                                                                                                             gCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTa                                                                                   <  2:1157906/73‑1 (MQ=255)

                                                                                                                             gCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTa                                                                                   >  1:1157906/1‑73 (MQ=255)

                                                                                                                             gCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGCGAAGCCGGCACAAGCGGAGCGACAgg                >  1:4665020/1‑140 (MQ=255)

                                                                                                                             cccGGACCCCCAGGCGCCTCCGGAGCCCCAGGCCCTACGGGTGAACCTGGAGCACACGGAGCCACAGGACCTACCGGGGAAGCCGGACCCCCGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACAgg                <  2:3499388/139‑1 (MQ=2)

                                                                                                                               cGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCggg                                          <  1:4589938/112‑1 (MQ=255)

                                                                                                                               cGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCggg                                          <  1:105749/112‑1 (MQ=255)

                                                                                                                                  accaccCGGGGCCACGGGAGCCACAGGCGCGACTGGTGAAGCCGGACCACCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACAGGAGCTa           <  1:2920447/140‑1 (MQ=17)

                                                                                                                                       ccGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGTGAAGCCGGACCACCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACAGGAGCTACCggg      <  1:2721756/140‑1 (MQ=255)

CAGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCGACAGGAGCGACAGGAGCTACCGGGGAAGCTGGACCAGCTGGAGCGACGGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGGGCCACGGGAGCCACAGGGGCTACTGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAGCCGGAGCGACAGGAGCTACCGGGGAAGCCGGACCAACCGGAGCGACAGGAGCTACCGGGGAAG  >  NZ_CP034943/607423‑607701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`